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16 Open 21 Closed
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Issues list

eti homologs --num_procs with more than 1 results in a run-time error
#171 opened Dec 15, 2024 by khiron
Add --ref_genes_file option to Homologs
#168 opened Dec 14, 2024 by khiron
@GavinHuttley
Checksum error downloading data from Ensembl release 113
#167 opened Dec 11, 2024 by khiron
1
establish whether duckdb is a viable replacement to sqlite
#150 opened Jul 30, 2024 by GavinHuttley
alignments command should accept file of genomic coordinates
#134 opened Jul 8, 2024 by GavinHuttley
installed does not show homology data installation good first issue Good for newcomers
#130 opened Jul 7, 2024 by GavinHuttley
Initial release on pypi
#86 opened Apr 10, 2024 by GavinHuttley
4 tasks
DOC: create docs for users help wanted Extra attention is needed
#85 opened Apr 10, 2024 by GavinHuttley
ENH: make download experience more robust enhancement New feature or request
#81 opened Mar 26, 2024 by GavinHuttley robust-usability
ENH: ability to get summary statistics for Ensembl hosted genomes
#74 opened Mar 4, 2024 by GavinHuttley
2 tasks
robust-usability
including repeats in annotation data for querying enhancement New feature or request
#65 opened Jan 30, 2024 by GavinHuttley
2 tasks
robust-usability
1
EnsemblLite roadmap sketch
#38 opened Dec 12, 2023 by GavinHuttley
8 of 13 tasks
ENH: added completion checkpoint files
#5 opened Aug 10, 2023 by GavinHuttley robust-usability
ENH: cli for downloading latest available species
#4 opened Aug 10, 2023 by GavinHuttley robust-usability
ENH: cli for listing the available whole genome alignments enhancement New feature or request
#3 opened Aug 10, 2023 by GavinHuttley robust-usability
ENH: cli interface for grabbing the species trees enhancement New feature or request
#2 opened Aug 10, 2023 by GavinHuttley robust-usability
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