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Create the cognoml package to implement an MVP API #51

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merged 20 commits into from
Oct 11, 2016

Commits on Sep 19, 2016

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Commits on Sep 20, 2016

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  2. Ignore __pycache__

    dhimmel committed Sep 20, 2016
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  4. Save output corresponding to hippo-input.json

    From the `cognoml` directory, ran:
    
    ```
    python analysis.py > ../data/api/hippo-output.json
    ```
    dhimmel committed Sep 20, 2016
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  5. Export model information to JSON output

    Also filter zero-variance features.
    dhimmel committed Sep 20, 2016
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Commits on Sep 21, 2016

  1. Return unselected observations

    Unselected observations (samples in the dataset that were not selected
    by the user) are now returned. These observations receive predictions
    but are missing (-1 encoded) for fields such as `testing` and `status`.
    
    Sorted model parameters by key.
    dhimmel committed Sep 21, 2016
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Commits on Sep 26, 2016

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Commits on Sep 27, 2016

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Commits on Sep 30, 2016

  1. Acquire data from figshare

    dhimmel committed Sep 30, 2016
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Commits on Oct 6, 2016

  1. Update for sklearn 0.18.0, Fix pipeline

    Fix pipeline according to:
    scikit-learn/scikit-learn#7536 (comment)
    
    Extract selected feature names according to:
    scikit-learn/scikit-learn#7536 (comment)
    dhimmel committed Oct 6, 2016
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  2. Merge branch 'master' into package

    Used `git checkout --theirs` to resolve conflicts
    dhimmel committed Oct 6, 2016
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Commits on Oct 7, 2016

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  2. Update API JSON files

    dhimmel committed Oct 7, 2016
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Commits on Oct 10, 2016

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Commits on Oct 11, 2016

  1. Address @gwaygenomics review comments

    Does not address "Lasso or Ridge only?"
    dhimmel committed Oct 11, 2016
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  2. Grid search: optimize alpha not l1_ratio

    Do not optimize `l1_ratio`. Instead use the default of 0.15. Search a denser
    grid for `alpha`. See cognoma#56
    dhimmel committed Oct 11, 2016
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