Extract gene list in the order plotted on heatmap by plot_pseudotime_heatmap

[shabs24]

Hello!

Is it possible to extract the list of genes in the order they appear on the heatmap in each cluster.

Any help will be appreciated.

Thanks

[Cynthia1012]

I have the same problem. Have you managed to solve it?

[shabs24]

I have the same problem. Have you managed to solve it?

Yes, I was able to solve it. Here is the code

t <- plot_pseudotime_heatmap(cds[genes,],cluster_rows = TRUE,
show_rownames = TRUE,return_heatmap=T)
t.data=cutree(t$tree_row, k=6)
t.order = t$tree_row[["order"]]
heatmap.rows = as.data.frame(t.data[t.order])