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312 Open 196 Closed
312 Open 196 Closed
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Issues list

monocle with bulk transcriptome data
#523 opened Dec 8, 2024 by lkjgoose
"reduceDimension" operation problem
#522 opened Dec 7, 2024 by Angle28
Error in 'cds <- orderCells(cds)'
#521 opened Oct 28, 2024 by liyiwang0725
8
error in evaluating the argument 'x' in selecting a method for function 'as.matrix': error in evaluating the argument 'x' in selecting a method for function 't': object 'unpackedMatrix_transpose' not found
#520 opened Oct 18, 2024 by PingWang7
Repoer error when run plot_pseudotime_heatmap in monocle2, call for help.
#519 opened Sep 29, 2024 by JWDu0122
2
Error in orderCells: 'from' contains NAs
#518 opened Sep 9, 2024 by rblame
11
error installing Monocle3 in R4..4
#517 opened Aug 6, 2024 by sanskritidey
monocle2 result is not reproducible!
#516 opened Aug 2, 2024 by hieunguyen4193
3
Issue with estimateDispersions()
#515 opened Jul 19, 2024 by aeg06
Error for importCDS function
#514 opened Jul 12, 2024 by hx07-code
difference between expressionFamily = uninormal() and expressionFamily=negbinomial.size()
#513 opened Jul 11, 2024 by yuanG2000
Error in if (progenitor_method == "duplicate") { : the condition has length > 1
#512 opened Jul 4, 2024 by duan513
not understanding max_components arg in reduceDimension() and how it impacts visualisation plot
#511 opened Apr 30, 2024 by klai001
View(cds)Error in warn_version(graph) : This graph was created by a now unsupported old igraph version. Call upgrade_graph() before using igraph functions on that object.
#510 opened Apr 24, 2024 by peibana
6
BEAM_error
#509 opened Mar 31, 2024 by kerwin223
1
BEAM Error
#508 opened Mar 13, 2024 by fightingevery
3
Eroor to install monocle v2
#507 opened Feb 22, 2024 by sanskritidey
1
Error in as.igraph.vs(graph, to) : Invalid vertex names
#506 opened Feb 21, 2024 by LiHangzls
1
reload cds cause error.
#505 opened Dec 27, 2023 by shanshenbing
1
Extract gene list in the order plotted on heatmap by plot_pseudotime_heatmap
#504 opened Dec 6, 2023 by shabs24
2
ordercells function error for large datasets
#503 opened Oct 5, 2023 by qimiaonnegliguo
Prepare for upcoming Seurat v5 release
#502 opened Oct 3, 2023 by saketkc
Unable to plot gene based on ordered input genes with plot_genes_in_pseudotime
#501 opened Aug 28, 2023 by Quianter
Error: unable to coerce from TsparseMatrix to [CR]sparseMatrixwhen length of 'i' slot exceeds 2^31-1
#500 opened Aug 9, 2023 by abulislam
1
Error when running reduceDimension
#499 opened Jul 10, 2023 by sejjer7
1
ProTip! What’s not been updated in a month: updated:<2024-11-18.