This repository contains code to enable automate the downloading of RegulomeDB annotations from a tsv source file.
run as follows: python AnnotateWithRegulomeDB.py --I input.tsv --O output.RegDB
the default input file format is as follows:
# coordinates are submitted as 1-based i.e. chrom pos-1 pos
# exactly 3 rows without data including col names row below, this is a tab delimited file
chrom pos
1 120001
3 150002