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Notebooks and various fixes for masked model training #19

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Notebooks and various fixes for masked model training

Notebooks and various fixes for masked model training #19

Triggered via pull request November 15, 2024 11:17
@RalfGRalfG
opened #5
bug-fixes
Status Failure
Total duration 19s
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test.yml

on: pull_request
Matrix: test
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32 errors
Ruff (F841): molexpress/datasets/encoders.py#L36
molexpress/datasets/encoders.py:36:33: F841 Local variable `e` is assigned to but never used
Ruff (F401): molexpress/pretraining/canonicalise_smiles.py#L4
molexpress/pretraining/canonicalise_smiles.py:4:8: F401 `os` imported but unused
Ruff (F841): molexpress/pretraining/canonicalise_smiles.py#L29
molexpress/pretraining/canonicalise_smiles.py:29:5: F841 Local variable `total_lines` is assigned to but never used
Ruff: molexpress/pretraining/debug_data.ipynb#L105
molexpress/pretraining/debug_data.ipynb:1:1: SyntaxError: Expected an indented block after `for` statement
Ruff (F401): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L37
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F401 `molexpress.ops.chem_ops.get_molecule` imported but unused
Ruff (F401): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L41
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F401 `wandb` imported but unused
Ruff (F401): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L42
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F401 `torch.utils.data.random_split` imported but unused
Ruff (F811): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L43
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F811 Redefinition of unused `partial` from cell 6, line 4
Ruff (F401): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L44
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F401 `tqdm.tqdm` imported but unused
Ruff (F541): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L192
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F541 f-string without any placeholders
test (3.10)
The job was canceled because "_3_9" failed.
Ruff (F841): molexpress/datasets/encoders.py#L36
molexpress/datasets/encoders.py:36:33: F841 Local variable `e` is assigned to but never used
Ruff (F401): molexpress/pretraining/canonicalise_smiles.py#L4
molexpress/pretraining/canonicalise_smiles.py:4:8: F401 `os` imported but unused
Ruff (F841): molexpress/pretraining/canonicalise_smiles.py#L29
molexpress/pretraining/canonicalise_smiles.py:29:5: F841 Local variable `total_lines` is assigned to but never used
Ruff: molexpress/pretraining/debug_data.ipynb#L105
molexpress/pretraining/debug_data.ipynb:1:1: SyntaxError: Expected an indented block after `for` statement
Ruff (F401): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L37
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F401 `molexpress.ops.chem_ops.get_molecule` imported but unused
Ruff (F401): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L41
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F401 `wandb` imported but unused
Ruff (F401): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L42
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F401 `torch.utils.data.random_split` imported but unused
Ruff (F811): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L43
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F811 Redefinition of unused `partial` from cell 6, line 4
Ruff (F401): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L44
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F401 `tqdm.tqdm` imported but unused
Ruff (F541): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L192
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F541 f-string without any placeholders
test (3.11)
The job was canceled because "_3_9" failed.
Ruff (F841): molexpress/datasets/encoders.py#L36
molexpress/datasets/encoders.py:36:33: F841 Local variable `e` is assigned to but never used
Ruff (F401): molexpress/pretraining/canonicalise_smiles.py#L4
molexpress/pretraining/canonicalise_smiles.py:4:8: F401 `os` imported but unused
Ruff (F841): molexpress/pretraining/canonicalise_smiles.py#L29
molexpress/pretraining/canonicalise_smiles.py:29:5: F841 Local variable `total_lines` is assigned to but never used
Ruff: molexpress/pretraining/debug_data.ipynb#L105
molexpress/pretraining/debug_data.ipynb:1:1: SyntaxError: Expected an indented block after `for` statement
Ruff (F401): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L37
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F401 `molexpress.ops.chem_ops.get_molecule` imported but unused
Ruff (F401): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L41
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F401 `wandb` imported but unused
Ruff (F401): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L42
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F401 `torch.utils.data.random_split` imported but unused
Ruff (F811): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L43
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F811 Redefinition of unused `partial` from cell 6, line 4
Ruff (F401): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L44
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F401 `tqdm.tqdm` imported but unused
Ruff (F541): molexpress/pretraining/encode_amino_acids-model-2.ipynb#L192
molexpress/pretraining/encode_amino_acids-model-2.ipynb:1:1: F541 f-string without any placeholders