v2.0.0-beta.5

Improvements 🚀

• PSMs with invalid amino acids (B, J, O, U, X, and Z), which are unsupported by MS²PIP, are now removed in all pipelines (Fixes #31).

Bugfixes 🐛

• Case-insensitive matching of msms.txt column names (e.g. both Mass Deviations [Da] and Mass deviations [Da] will now both be accepted)
• Fix MGF title parsing in MaxQuant pipeline

Refactoring and minor changes 🔧

• Replaced assertions with specific exceptions
• Removed empty module runner.py
• Dropped support for Python 3.6 (did not work with subprocess capture_output)