Add new readers to readme

compomics · Nov 6, 2024 · 00c2714 · 00c2714
1 parent a9cac75
commit 00c2714
Showing 1 changed file with 5 additions and 2 deletions.
diff --git a/README.rst b/README.rst
@@ -89,6 +89,9 @@ Supported file formats
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  File format                                                                                                           psm_utils tag            Read support    Write support
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+ `AlphaDIA precursors TSV <https://alphadia.readthedocs.io/en/latest/quickstart.html#output-files>`_                   ``alphadia``             ✅              ❌
+ `DIA-NN TSV <https://github.com/vdemichev/DiaNN#output>`_                                                             ``diann``                ✅              ❌
+ `FragPipe PSM TSV <https://fragpipe.nesvilab.org/docs/tutorial_fragpipe_outputs.html#psmtsv/>`_                       ``fragpipe``             ✅              ❌
  `ionbot CSV <https://ionbot.cloud/>`_                                                                                 ``ionbot``               ✅              ❌
  `OpenMS idXML <https://www.openms.de/>`_                                                                              ``idxml``                ✅              ✅
  `MaxQuant msms.txt <https://www.maxquant.org/>`_                                                                      ``msms``                 ✅              ❌
@@ -98,10 +101,10 @@ Supported file formats
  `Peptide Record <https://psm-utils.readthedocs.io/en/stable/api/psm_utils.io/#module-psm_utils.io.peptide_record>`_   ``peprec``               ✅              ✅
  `pepXML <http://tools.proteomecenter.org/wiki/index.php?title=Formats:pepXML>`_                                       ``pepxml``               ✅              ❌
  `Percolator tab <https://github.com/percolator/percolator/wiki/Interface>`_                                           ``percolator``           ✅              ✅
- Proteome Discoverer MSF                                                                                               ``proteome_discoverer``  ✅              ❌
+ `Proteome Discoverer MSF <#>`_                                                                                        ``proteome_discoverer``  ✅              ❌
  `Sage Parquet <https://github.com/lazear/sage/blob/v0.14.7/DOCS.md#interpreting-sage-output>`_                        ``sage_parquet``         ✅              ❌
  `Sage TSV <https://github.com/lazear/sage/blob/v0.14.7/DOCS.md#interpreting-sage-output>`_                            ``sage_tsv``             ✅              ❌
- ProteoScape Parquet                                                                                                   ``proteoscape``          ✅              ❌
+ `ProteoScape Parquet <#>`_                                                                                            ``proteoscape``          ✅              ❌
  `TSV <https://psm-utils.readthedocs.io/en/stable/api/psm_utils.io/#module-psm_utils.io.tsv>`_                         ``tsv``                  ✅              ✅
  `X!Tandem XML <https://www.thegpm.org/tandem/>`_                                                                      ``xtandem``              ✅              ❌
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