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Fix peptidoform modification offset and mass (fixes #100) #104

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merged 1 commit into from
Oct 31, 2024

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@RalfG RalfG commented Oct 31, 2024

Fixed

  • io.pepxml: Fix modification location and mass parsing. Position had an off-by-one error and the reported mass was the sum of the residue and modification instead of the modification alone. (fixes pepXML modifications are offset by one #100)

@RalfG RalfG added the bug Something isn't working label Oct 31, 2024
@RalfG RalfG added this to the v1.2.0 milestone Oct 31, 2024
@RalfG RalfG force-pushed the fix/pepxml-mod-offset branch from 407a8f3 to 8fd1299 Compare October 31, 2024 16:27
@RalfG RalfG merged commit fe52146 into main Oct 31, 2024
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@RalfG RalfG deleted the fix/pepxml-mod-offset branch October 31, 2024 16:30
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codecov bot commented Oct 31, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 67.67%. Comparing base (b0fb411) to head (8fd1299).
Report is 2 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #104      +/-   ##
==========================================
+ Coverage   67.63%   67.67%   +0.04%     
==========================================
  Files          27       27              
  Lines        2629     2633       +4     
==========================================
+ Hits         1778     1782       +4     
  Misses        851      851              
Flag Coverage Δ
unittests 67.67% <100.00%> (+0.04%) ⬆️

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pepXML modifications are offset by one
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