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connor-lab

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  1. ncov2019-artic-nf ncov2019-artic-nf Public

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow 91 86

  2. aln2type aln2type Public

    Python 8 3

  3. vapor vapor Public

    Python 6 9

  4. singularity-recipes singularity-recipes Public

    A collection of Singularity recipes useful for our nextflow pipelines

    Perl 5 1

  5. nextflow_pipelines nextflow_pipelines Public

    Nextflow pipeline script, config and ancillary files for PHW PenGU sequencing

    Nextflow 3 2

  6. qc_nextflow qc_nextflow Public

    A nextflow pipeline for inital QC of Illumina sequencing data

    Nextflow 3 1

Repositories

Showing 10 of 25 repositories
  • ncov2019-artic-nf Public

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    connor-lab/ncov2019-artic-nf’s past year of commit activity
    Nextflow 91 AGPL-3.0 86 24 12 Updated Nov 8, 2023
  • vapor Public
    connor-lab/vapor’s past year of commit activity
    Python 6 GPL-3.0 9 5 1 Updated Jun 29, 2023
  • pengu-ddt Public

    A tool for interacting with the DIGEST project PostgreSQL database

    connor-lab/pengu-ddt’s past year of commit activity
    Python 1 0 0 3 Updated Dec 8, 2022
  • aln2type Public
    connor-lab/aln2type’s past year of commit activity
    Python 8 3 4 1 Updated Oct 13, 2022
  • msa2vcf Public
    connor-lab/msa2vcf’s past year of commit activity
    Python 1 3 1 2 Updated May 20, 2022
  • grapevine_nextflow Public Forked from COG-UK/datapipe

    Nextflow implementation of grapevine

    connor-lab/grapevine_nextflow’s past year of commit activity
    Nextflow 0 3 0 0 Updated Mar 9, 2021
  • snapper3 Public Forked from ukhsa-collaboration/snapper3

    partial reimplementation of snapperdb

    connor-lab/snapper3’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Jan 19, 2021
  • ncov-tools Public Forked from jts/ncov-tools

    Small collection of tools for performing quality control on coronavirus sequencing data and genomes

    connor-lab/ncov-tools’s past year of commit activity
    Python 3 MIT 16 0 0 Updated Sep 9, 2020
  • fieldbioinformatics Public Forked from artic-network/fieldbioinformatics

    The ARTIC field bioinformatics pipeline

    connor-lab/fieldbioinformatics’s past year of commit activity
    Python 0 MIT 88 0 0 Updated Mar 9, 2020
  • nextflow_pipelines Public

    Nextflow pipeline script, config and ancillary files for PHW PenGU sequencing

    connor-lab/nextflow_pipelines’s past year of commit activity
    Nextflow 3 2 0 0 Updated Dec 7, 2019
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