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Update README.md
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aineniamh authored Apr 29, 2020
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Expand Up @@ -63,14 +63,14 @@ Your output will be a csv file with taxon name and lineage assigned, one line co

Example:

| Taxon | Lineage | aLRT | UFbootstrap | status | note |
| ----------- |:---------:|:----------:|:----------:| :----------:| :----------:|
| Virus1 | B.1 | 80 | 82 | success | |
| Virus2 | A.1 | 65 | 95 | success | |
| Virus3 | A.3 | 100 | 100 | success | |
| Virus4 | B.1.4 | 82 | 73 | success | |
| Virus5 | None | 0 | 0 | fail | N_content:0.80 |
| Virus6 | None | 0 | 0 | fail | seq_len:0 |
| Taxon | Lineage | aLRT | UFbootstrap | lineages_version |status | note |
| ----------- |:---------:|:----------:|:----------:| :----------:|:----------:| :----------:|
| Virus1 | B.1 | 80 | 82 | 2020-04-27 | passed_qc | |
| Virus2 | A.1 | 65 | 95 | 2020-04-27 | passed_qc | |
| Virus3 | A.3 | 100 | 100 | 2020-04-27 | passed_qc | |
| Virus4 | B.1.4 | 82 | 73 | 2020-04-27 | passed_qc | |
| Virus5 | None | 0 | 0 | 2020-04-27 | fail | N_content:0.80 |
| Virus6 | None | 0 | 0 | 2020-04-27 | fail | seq_len:0 |

Resources for interpreting the aLRT and UFbootstrap output can be found [here](http://www.iqtree.org/doc/Tutorial#assessing-branch-supports-with-single-branch-tests) and [here](http://www.iqtree.org/doc/Command-Reference).

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