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Fix --min-length parameter help #438

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Fix --min-length parameter help #438

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2 changes: 1 addition & 1 deletion pangolin/command.py
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Original file line number Diff line number Diff line change
Expand Up @@ -72,7 +72,7 @@ def main(sysargs = sys.argv[1:]):
a_group.add_argument("--skip-scorpio", action='store_true', default=False, help="Developer option - do not use scorpio to check VOC/VUI lineage assignments.",dest="skip_scorpio")

a_group.add_argument('--max-ambig', action="store", type=float,help="Maximum proportion of Ns allowed for pangolin to attempt assignment. Default: 0.3",dest="maxambig")
a_group.add_argument('--min-length', action="store", type=int,help="Minimum query length allowed for pangolin to attempt assignment. Default: 25000",dest="minlen")
a_group.add_argument('--min-length', action="store", type=int,help="Minimum query length excluding Ns allowed for pangolin to attempt assignment. Default: 0 (use --max-ambig)",dest="minlen")
a_group.add_argument('--usher', action='store_true', default=False, help=argparse.SUPPRESS)

d_group = parser.add_argument_group('Data options')
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