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Add entries for pangolin-data/-assignment, update workflows #553

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Add entries for pangolin-data/-assignment, update workflows #553

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1195b2a
Add entries for pangolin-data/-assignment 1.28.1
AngieHinrichs Jul 2, 2024
fde1a27
Add entries for pangolin-data/-assignment 1.28.1 (#547)
AngieHinrichs Aug 9, 2024
4265113
Add entries for pangolin-data/-assignment 1.29
AngieHinrichs Jul 30, 2024
cf95558
Add entries for pangolin-data/-assignment 1.30
AngieHinrichs Sep 22, 2024
b49546e
Add entries for pangolin-data/-assignment 1.31
AngieHinrichs Nov 21, 2024
d6b1323
Get workflows running again
AngieHinrichs Nov 21, 2024
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6 changes: 2 additions & 4 deletions .github/workflows/pangolin.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,14 +12,12 @@ jobs:
matrix:
os: ["ubuntu-latest"]
steps:
- uses: actions/checkout@v2
- uses: conda-incubator/setup-miniconda@v2
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v3
with:
environment-file: environment.yml
activate-environment: pangolin
channels: conda-forge,bioconda,defaults
conda-version: "23.5.0"
mamba-version: "*"
- name: Install pangolin
run: pip install -e .
- name: Check pangolin version
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5 changes: 2 additions & 3 deletions .github/workflows/pangolin_macos.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,14 +12,13 @@ jobs:
matrix:
os: ["macos-latest"]
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
- uses: conda-incubator/setup-miniconda@v2
with:
environment-file: environment.yml
activate-environment: pangolin
channels: conda-forge,bioconda,defaults
conda-version: "23.5.0"
mamba-version: "*"
miniconda-version: "latest"
- name: Install pangolin
run: pip install -e .
- name: Check pangolin version
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2 changes: 2 additions & 0 deletions pangolin/data/data_compatibility.csv
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Original file line number Diff line number Diff line change
@@ -1,4 +1,5 @@
data_source,version,min_pangolin_version,min_scorpio_version
pangolin-data,1.31,4.3,
pangolin-data,1.30,4.3,
pangolin-data,1.29,4.3,
pangolin-data,1.28.1,4.3,
Expand Down Expand Up @@ -29,6 +30,7 @@ pangolin-data,1.6,4,
pangolin-data,1.3,4,
pangolin-data,1.2.133,4,
pangolin-data,1.2.127,4,
pangolin-assignment,1.31,4.3,
pangolin-assignment,1.30,4.3,
pangolin-assignment,1.29,4.3,
pangolin-assignment,1.28.1,4.3,
Expand Down
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