Merge branch 'master' into implement-example-process

.github/workflows/greetings.yml

@@ -2,6 +2,12 @@ name: Greetings
 
 on: [pull_request, issues]
 
+# cancel the current workflow if another commit was pushed on the same PR or reference
+# uses the GitHub workflow name to avoid collision with other workflows running on the same PR/reference
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
 jobs:
   greeting:
     runs-on: ubuntu-latest

.github/workflows/issue-labeler.yml

@@ -1,17 +1,29 @@
 # reference: https://github.com/github/issue-labeler
 
-# FIXME: find a way to avoid the label to remove tags...
-#name: "Issue Labeler"
-#on:
-#  issues:
-#    types: [opened, edited]
-#
-#jobs:
-#  triage:
-#    runs-on: ubuntu-latest
-#    steps:
-#    - uses: github/[email protected]
-#      with:
-#        repo-token: "${{ secrets.GITHUB_TOKEN }}"
-#        configuration-path: .github/labeler-words.yml
-#        enable-versioned-regex: 0
+name: "Issue Labeler"
+on:
+  issues:
+    types: [opened, edited]
+
+# cancel the current workflow if another commit was pushed on the same PR or reference
+# uses the GitHub workflow name to avoid collision with other workflows running on the same PR/reference
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+permissions:
+  issues: write
+  contents: read
+
+jobs:
+  triage:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: github/[email protected]
+      with:
+        repo-token: "${{ secrets.GITHUB_TOKEN }}"
+        configuration-path: .github/labeler-words.yml
+        enable-versioned-regex: 0
+        include-title: 1
+        include-body: 1
+        sync-labels: 0

.github/workflows/pr-labeler.yml

@@ -12,6 +12,12 @@ on:
   schedule:
     - cron: '0 */12 * * *'
 
+# cancel the current workflow if another commit was pushed on the same PR or reference
+# uses the GitHub workflow name to avoid collision with other workflows running on the same PR/reference
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
 jobs:
   original-labeler:
     # reference: https://github.com/actions/labeler

.github/workflows/secret-scan.yml

@@ -14,6 +14,12 @@ on:
   - pull_request
   - push
 
+# cancel the current workflow if another commit was pushed on the same PR or reference
+# uses the GitHub workflow name to avoid collision with other workflows running on the same PR/reference
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
 jobs:
   #trufflehog:
   #  runs-on: ubuntu-latest

.github/workflows/tests.yml

@@ -7,6 +7,12 @@ on:
   - release
   - workflow_dispatch
 
+# cancel the current workflow if another commit was pushed on the same PR or reference
+# uses the GitHub workflow name to avoid collision with other workflows running on the same PR/reference
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
 jobs:
   # see: https://github.com/fkirc/skip-duplicate-actions
   skip_duplicate:
@@ -33,6 +39,7 @@ jobs:
     env:
       # override make command to install directly in active python
       CONDA_CMD: ""
+      DOCKER_TEST_EXEC_ARGS: "-T"
     services:
       # Label used to access the service container
       mongodb:
@@ -46,15 +53,6 @@ jobs:
         allow-failure: [false]
         test-case: [test-unit-only, test-func-only]
         include:
-          # end-of-life python
-          - os: ubuntu-20.04
-            python-version: "3.6"
-            allow-failure: true
-            test-case: test-unit-only
-          - os: ubuntu-20.04
-            python-version: "3.6"
-            allow-failure: true
-            test-case: test-func-only
           # experimental python
           - os: ubuntu-latest
             python-version: "3.11"

.pylintrc

@@ -32,7 +32,8 @@ limit-inference-results=100
 # usually to register additional checkers.
 # https://pylint.pycqa.org/en/latest/technical_reference/extensions.html
 load-plugins=pylint.extensions.docparams,
-             pylint.extensions.mccabe
+             pylint.extensions.mccabe,
+             pylint_per_file_ignores
 
 # https://pylint.pycqa.org/en/latest/technical_reference/extensions.html#design-checker-options
 max-complexity = 24
@@ -125,6 +126,9 @@ disable=C0111,missing-docstring,
 
 # note: (C0412, ungrouped-imports) is managed via isort tool, ignore false positives
 
+per-file-ignores =
+  tests/*:R1729
+
 # Enable the message, report, category or checker with the given id(s). You can
 # either give multiple identifier separated by comma (,) or put this option
 # multiple time (only on the command line, not in the configuration file where

.readthedocs.yml

@@ -1,13 +1,15 @@
 # configuration to setup readthedocs
 version: 2
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.10"
 sphinx:
   configuration: docs/source/conf.py
 #formats: all
 formats:
   - htmlzip
 python:
-  version: "3.7"
   install:
     - requirements: requirements-sys.txt
     - requirements: requirements-doc.txt
-  system_packages: false