Fix uncertainty calculation in StereoMeanCombiner #4989
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "**" | |
| pull_request: | |
| env: | |
| NUMBA_NUM_THREADS: 1 | |
| OMP_NUM_THREADS: 1 | |
| MKL_NUM_THREADS: 1 | |
| MPLBACKEND: Agg | |
| PYTEST_ADDOPTS: --color=yes | |
| GITHUB_PR_NUMBER: ${{ github.event.number }} | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Check README syntax | |
| run: | | |
| pip install restructuredtext-lint | |
| restructuredtext-lint README.rst | |
| - uses: pre-commit/[email protected] | |
| with: | |
| extra_args: --files $(git diff origin/main --name-only) | |
| tests: | |
| runs-on: ${{ matrix.os }} | |
| needs: lint | |
| strategy: | |
| matrix: | |
| include: | |
| - name: Linux (3.10, mamba) | |
| os: ubuntu-latest | |
| python-version: "3.10" | |
| install-method: mamba | |
| extras: tests,all | |
| - name: Linux (3.10, pip) | |
| os: ubuntu-latest | |
| python-version: "3.10" | |
| install-method: pip | |
| extras: tests,all | |
| - name: Linux (3.11, pip, minimal-dependencies) | |
| os: ubuntu-latest | |
| python-version: "3.11" | |
| install-method: pip | |
| extras: tests | |
| - name: Linux (3.12, mamba, coverage) | |
| os: ubuntu-latest | |
| python-version: "3.12" | |
| install-method: mamba | |
| extra-args: ["codecov"] | |
| extras: tests,all | |
| - name: Linux (3.12, pip) | |
| os: ubuntu-latest | |
| python-version: "3.12" | |
| install-method: pip | |
| extras: tests,all | |
| # macos 13 image is x86-based | |
| - name: macos (3.10, x86_64, pip) | |
| os: macos-13 | |
| python-version: "3.10" | |
| install-method: pip | |
| extras: tests,all | |
| # macos 14 image is arm64 based | |
| - name: macos (3.12, arm64, mamba) | |
| os: macos-14 | |
| python-version: "3.12" | |
| install-method: mamba | |
| extras: tests,all | |
| defaults: | |
| run: | |
| # We need login shells (-l) for micromamba to work. | |
| shell: bash -leo pipefail {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: cache test data | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/ctapipe | |
| key: ctapipe-test-data | |
| - name: Prepare mamba installation | |
| if: matrix.install-method == 'mamba' && contains(github.event.pull_request.labels.*.name, 'documentation-only') == false | |
| env: | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| run: | | |
| # setup correct python version | |
| sed -i -e "s/- python=.*/- python=$PYTHON_VERSION/g" environment.yml | |
| - name: mamba setup | |
| if: matrix.install-method == 'mamba' && contains(github.event.pull_request.labels.*.name, 'documentation-only') == false | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: environment.yml | |
| cache-downloads: true | |
| - name: Python setup | |
| if: matrix.install-method == 'pip' && contains(github.event.pull_request.labels.*.name, 'documentation-only') == false | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| check-latest: true | |
| - if: matrix.install-method == 'pip' && runner.os == 'macOS' && contains(github.event.pull_request.labels.*.name, 'documentation-only') == false | |
| name: Fix Python PATH on macOS | |
| # See https://github.com/actions/setup-python/issues/132 and | |
| # https://github.com/actions/setup-python/issues/132#issuecomment-779406058 | |
| # Login shells on macOS prepend system paths, so we need to | |
| # prepend the python path from actions/setup-python. | |
| # Micromamba sets up ~/.bash_profile, where we need to set the path now. | |
| run: | | |
| tee -a ~/.bash_profile <<<'export PATH="$pythonLocation/bin:$PATH"' | |
| - name: Install dependencies | |
| if: contains(github.event.pull_request.labels.*.name, 'documentation-only') == false | |
| env: | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| EXTRAS: ${{ matrix.extras }} | |
| run: | | |
| python --version | grep "Python ${PYTHON_VERSION}" | |
| pip install -e ".[${EXTRAS}]" | |
| pip install ./test_plugin | |
| pip freeze | |
| pip list | |
| - name: ctapipe-info | |
| if: contains(github.event.pull_request.labels.*.name, 'documentation-only') == false | |
| run: | | |
| ctapipe-info --all | |
| - name: Tests | |
| if: contains(github.event.pull_request.labels.*.name, 'documentation-only') == false | |
| run: | | |
| pytest -n auto --dist loadscope \ | |
| --cov --cov-report=xml \ | |
| --doctest-modules --doctest-glob='*.rst' \ | |
| --ignore=docs/conf.py \ | |
| src/ctapipe docs | |
| ctapipe-info --version | |
| - name: Store info for sonar | |
| env: | |
| REF_NAME: ${{ github.ref_name }} | |
| REF_TYPE: ${{ github.ref_type }} | |
| PR_NUMBER: ${{ github.event.pull_request.number }} | |
| SOURCE_REPOSITORY: ${{ github.event.pull_request.head.repo.full_name }} | |
| SOURCE_BRANCH: ${{ github.event.pull_request.head.ref }} | |
| TARGET_BRANCH: ${{ github.event.pull_request.base.ref }} | |
| run: | | |
| echo "PR_NUMBER=${PR_NUMBER}" >> sonar_env | |
| echo "SOURCE_REPOSITORY=${SOURCE_REPOSITORY}" >> sonar_env | |
| echo "SOURCE_BRANCH=${SOURCE_BRANCH}" >> sonar_env | |
| echo "TARGET_BRANCH=${TARGET_BRANCH}" >> sonar_env | |
| cat sonar_env | |
| # upload coverage report for sonar workflow | |
| - uses: actions/upload-artifact@v4 | |
| if: contains(matrix.extra-args, 'codecov') && contains(github.event.pull_request.labels.*.name, 'documentation-only') == false | |
| with: | |
| name: ctapipe-coverage-report | |
| path: | | |
| coverage.xml | |
| sonar_env | |
| docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install doc dependencies | |
| run: | | |
| sudo apt update --yes && sudo apt install --yes git build-essential pandoc graphviz ffmpeg | |
| pip install -U pip towncrier setuptools | |
| pip install -e .[docs] | |
| pip install ./test_plugin | |
| git describe --tags | |
| python -c 'import ctapipe; print(ctapipe.__version__)' | |
| - name: Produce Changelog | |
| run: | | |
| towncrier build --yes | |
| - name: Build docs | |
| run: make doc |