Merge branch 'release/0.15.5'

CHANGELOG

@@ -1,5 +1,21 @@
+CHANGELOG
+=========
+
+2018-10-15 v0.15.5
+
+ * Update badges in README (Taeber Rapczak)
+ * Merge pull request #230 from PFWhite/feature/rediRunDebugDocs (Christopher P. Barnes)
+ * Update redi-run-debug.md (Patrick White)
+ * added docs for debuging redi runs (Patrick White)
+ * Update README-example-files.md (Michael Buchholz)
+ * Improve configuration examples for use in vagrant installs (Roy Keyes)
+ * Merge pull request #212 from ctsit/develop (Nicholas Rejack)
+ * Merge pull request #211 from nrejack/fix_getemrdata_unittest (Nicholas Rejack)
+ * Fixing broken unittest TestGetEMRData. Skipping problematic test. See issue #210. (Nicholas Rejack)
+
+
 2016-07-12 v0.15.4
- 
+
  *   Updating .gitignore. (Nicholas Rejack)
  *   Adding new test to verify behavior when keep_all_events is set to True. (Nicholas Rejack)
  *   Adding new logic to properly update event tree when keep_all_events is True. (Nicholas Rejack)
@@ -9,6 +25,7 @@
  *   Adding setuptools_scm to install_requires in setup.py. (Nicholas Rejack)
  *   fixed merge messages left in TODO (Christopher Barnes)
 
+
 2016-05-19 v0.15.3
 
 * modify TestSortElementTree to test for new commandline switch for keeping all results that bypasses the compress events functions (Christopher Barnes)
@@ -47,13 +64,15 @@
 * cleanup -K keep all switch (Christopher Barnes)
 * add switch to keep all results (Christopher Barnes)
 
+
 2016-03-17 v0.15.2
 
  * Summary: Hotfix to fix logging behavior when input file is not present.
 
 * Fixing check for input file in redi.py. Now log the file's location only if it's there. (Nicholas Rejack)
 * Update README.md (Nicholas Rejack)
 
+
 2016-03-17 v0.15.1
 
 * Summary: RED-I now accepts a file as input from the command line, using -f FILENAME.

README.md

@@ -1,12 +1,10 @@
 RED-I Project
 =============
 
-<a href="https://zenodo.org/badge/latestdoi/4064/ctsit/redi"><img src="https://zenodo.org/badge/4064/ctsit/redi.svg" alt="10.5281/zenodo.47793"><a>
+[![10.5281/zenodo.47793](https://zenodo.org/badge/4064/ctsit/redi.svg)](http://ufl.to/ctsit)
 [![Travis CI](https://api.travis-ci.org/ctsit/redi.svg?branch=master)](https://api.travis-ci.org/ctsit/redi.svg?branch=master)
-[![Version](https://pypip.in/v/redi/badge.png)](https://pypip.in/v/redi/badge.png)
-[![Coverage Status Master](https://coveralls.io/repos/ctsit/redi/badge.svg?branch=master)](https://coveralls.io/r/ctsit/redi?branch=master)
-[![Coverage Status Develop](https://coveralls.io/repos/ctsit/redi/badge.svg?branch=develop)](https://coveralls.io/r/ctsit/redi?branch=develop)
-[![Downloads](https://pypip.in/d/redi/badge.png)](https://pypip.in/d/redi/badge.png)
+[![PyPI version](https://badge.fury.io/py/redi.svg)](https://badge.fury.io/py/redi)
+[![Coverage Status Develop](https://coveralls.io/repos/ctsit/redi/badge.svg?branch=master)](https://coveralls.io/r/ctsit/redi?branch=master)
 
 
 Introduction
@@ -25,8 +23,9 @@ investigator with feedback on upload success in the form of summary
 reporting of the data upload process.
 
 You can view a presentation of the RED-I tool in action on
-[youtube](https://www.youtube.com/watch?v=0x04y5SNPL8&feature=youtu.be)
+[youtube](https://www.youtube.com/watch?v=0x04y5SNPL8&feature=youtu.be).
 
 For the official documentation please refer to
 [http://redi.readthedocs.io](http://redi.readthedocs.io) or
 [RED-I Project](https://github.com/ctsit/redi/blob/master/docs/about.rst).
+

docs/redi-run-debug.md

@@ -0,0 +1,15 @@
+# So you didn't get the report? #
+
+## Steps to debug ##
+
+#### 1 check config.ini ####
+If the email setting is False then it wont have emailed, the run may have worked.
+
+#### 2 check for reports ####
+Go to the project root. Run `ls -alh`. See when things were modified. Check to see if there are new files added or changed a little after the run should have run.
+
+#### 3 Check the cron.d ####
+Go and look at the files in `/etc/cron.d`. See if the command is scheduled to run at the time you think. 
+
+#### 4 Check mail ####
+When cron jobs error they send a local mail to the root user. The `redi` user is forwarded these mails. You can switch users to `redi` by running `sudo su - redi`. To view the mails use the `mutt` command. 

setup.py

@@ -19,15 +19,15 @@
 setup(
     name='redi',
     use_scm_version=True,
-    author='https://www.ctsi.ufl.edu/research/study-development/informatics-consulting/',
+    author='CTS-IT at the University of Florida',
     author_email='[email protected]',
     packages=find_packages(exclude=['test']),
     include_package_data=True,
     package_data={
         'redi': ['utils/*.xsl', 'utils/*.xsd']
     },
     url='https://github.com/ctsit/redi',
-    download_url = 'https://github.com/ctsit/redi/releases/tag/0.15.4',
+    download_url = 'https://github.com/ctsit/redi/releases/tag/0.15.5',
     keywords = ['EMR', 'EHR', 'REDCap', 'Clinical Data'],
     license='BSD 3-Clause',
     description='REDCap Electronic Data Importer',