Update index

index.Rmd

@@ -4,7 +4,7 @@ title: "Cy's plotfolio"
 
 A collection of notebooks to recreate some of the visualizations as published in my [scientific papers](https://scholar.google.com/citations?user=No8cy_cAAAAJ&hl=en).
 
-## Visualizations
+## Visualizations - hierarchy
 
 [**HierTree**](HierTree.html): An example for plotting a hierarchical tree (not dendrogram!) based on result from hierarchical clustering.
 
@@ -16,4 +16,47 @@ knitr::include_graphics("images/fig31_adjust_nodes.png")
 
 <br> <br>
 
+[**Sunburst**](Sunburst.html): 
+
+<br> <br>
+
+
+## Visualizations - sc/snRNA-seq
+
 [**UMAP-Constellation**](UCon.html): Creating a UMAP and constellation from small single cell RNA-seq dataset
+
+<br> <br>
+
+[**3D UMAP**](3dUMAP.html): Creating a 3D UMAP from small single cell RNA-seq dataset
+
+<br> <br>
+
+[**Node dodge app **](Node_dodge.html): Creating a 3D UMAP from small single cell RNA-seq dataset
+
+<br> <br>
+
+## Visualizations - spatialTX
+
+[**SpatialTx with CCF outlines**](MERFISH_plot.html): 
+
+<br> <br>
+
+[**3D SpatialTx**](3dMERFISH_plot.html): 
+
+<br> <br>
+
+## Visualizations - CCF
+
+[**Flatmaps**](Flatmap.html): 
+
+<br> <br>
+
+[**ABA - ISH**](abaISH.html): 
+
+<br> <br>
+
+[**ABA - svg**](abaSVG.html): 
+
+<br> <br>
+
+## Visualizations - random