Add Y5 to orange display color group (#224)

* add Y5 to orange display color group * fix ome-zarr-py CI issue
czbiohub-sf · Jun 14, 2024 · 4c3d285 · 4c3d285
1 parent dfc62b8
commit 4c3d285
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/iohub/display_utils.py b/iohub/display_utils.py
@@ -26,7 +26,7 @@
     "blue": ["Blue", "DAPI", "BFP", "Hoechst"],
     "red": ["Red"],
     "yellow": ["Yellow", "Cy3"],  # Emission around 540-570 nm
-    "orange": ["Orange", "Cy5"],  # emission around 650-680 nm
+    "orange": ["Orange", "Cy5", "Y5"],  # emission around 650-680 nm
 }
 
 

diff --git a/setup.cfg b/setup.cfg
@@ -51,7 +51,7 @@ dev =
     hypothesis>=6.61.0
     requests>=2.22.0
     wget>=3.2
-    ome-zarr>=0.6.1
+    ome-zarr>=0.9.0
 doc =
     matplotlib
     numpydoc>=1.1.0

diff --git a/tests/ngff/test_ngff.py b/tests/ngff/test_ngff.py
@@ -199,7 +199,7 @@ def test_write_ome_zarr(channels_and_random_5d, arr_name):
         # round-trip test with the offical reader implementation
         ext_reader = Reader(parse_url(dataset.zgroup.store.path))
         node = list(ext_reader())[0]
-        assert node.metadata["name"] == channel_names
+        assert node.metadata["channel_names"] == channel_names
         assert node.specs[0].datasets == [arr_name]
         assert node.data[0].shape == random_5d.shape
         assert node.data[0].dtype == random_5d.dtype