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update target folder
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rcannood committed Jun 16, 2022
1 parent d0d0dfb commit 4cea1de
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Showing 18 changed files with 12,716 additions and 0 deletions.
786 changes: 786 additions & 0 deletions target/docker/download/sync_test_resources/sync_test_resources

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899 changes: 899 additions & 0 deletions target/docker/download/sync_test_resources/viash.yaml

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10 changes: 10 additions & 0 deletions target/docker/maxquant/maxquant/settings/group_type.tsv
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id reporterMassTolerance reporterPif reporterFraction reporterBasePeakRatio neucodeMaxPpm neucodeResolution neucodeResolutionInMda neucodeInSilicoLowRes maxLabeledAa timsHalfWidth timsStep timsResolution timsMinMsmsIntensity
Standard NaN NaN NaN NaN 0 0 False False 0 0 0 0 0
Reporter ion MS2 0.003 0 0 0 0 0 False False 0 0 0 0 0
Reporter ion MS3 0.003 0 0 0 0 0 False False 0 0 0 0 0
NeuCode NaN NaN NaN NaN 3 4 True True 3 0 0 0 0
BoxCar NaN NaN NaN NaN 0 0 False False 0 0 0 0 0
TIMS-DDA NaN NaN NaN NaN 0 0 False False 0 6 3 32000 1.5
MaxDIA NaN NaN NaN NaN 0 0 False False 0 0 0 0 0
TIMS MaxDIA NaN NaN NaN NaN 0 0 False False 0 6 3 32000 0
BoxCar MaxDIA NaN NaN NaN NaN 0 0 False False 0 0 0 0 0
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id matchingTimeWindow matchingIonMobilityWindow alignmentTimeWindow alignmentIonMobilityWindow
TRUE 0.7 0.05 20 1
FALSE 0 0 0 0
6 changes: 6 additions & 0 deletions target/docker/maxquant/maxquant/settings/ms_instrument.tsv
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id msInstrument maxCharge minPeakLen diaMinPeakLen useMs1Centroids useMs2Centroids intensityDetermination centroidMatchTol valleyFactor advancedPeakSplitting intensityThresholdMs1 intensityThresholdMs2 mainSearchTol isotopeMatchTol isotopeMatchTolInPpm checkMassDeficit intensityDependentCalibration minScoreForCalibration diaTopNForQuant diaBackgroundSubtraction diaBackgroundSubtractionQuantile diaLfqWeightedMedian
Orbitrap 0 7 2 1 False False 0 8 1.4 False 0 0 4.5 2 True True False 70 10 False 0.5 False
Bruker Q-TOF 1 4 3 2 True True 3 10 1.2 True 30 30 10 0.005 False False True 40 10 False 0.5 True
Sciex Q-TOF 2 4 2 2 False False 3 10 1.2 True 100 20 10 0.005 False False True 40 3 True 0.7 True
Agilent Q-TOF 3 4 3 2 True True 3 10 1.2 True 0 0 10 0.005 False False True 40 10 False 0.5 True
Bruker TIMS 4 4 2 2 False False 3 10 1.2 True 30 30 10 0.005 False False True 40 10 False 0.5 True
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