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target/docker/download/sync_test_resources/sync_test_resources
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id reporterMassTolerance reporterPif reporterFraction reporterBasePeakRatio neucodeMaxPpm neucodeResolution neucodeResolutionInMda neucodeInSilicoLowRes maxLabeledAa timsHalfWidth timsStep timsResolution timsMinMsmsIntensity | ||
Standard NaN NaN NaN NaN 0 0 False False 0 0 0 0 0 | ||
Reporter ion MS2 0.003 0 0 0 0 0 False False 0 0 0 0 0 | ||
Reporter ion MS3 0.003 0 0 0 0 0 False False 0 0 0 0 0 | ||
NeuCode NaN NaN NaN NaN 3 4 True True 3 0 0 0 0 | ||
BoxCar NaN NaN NaN NaN 0 0 False False 0 0 0 0 0 | ||
TIMS-DDA NaN NaN NaN NaN 0 0 False False 0 6 3 32000 1.5 | ||
MaxDIA NaN NaN NaN NaN 0 0 False False 0 0 0 0 0 | ||
TIMS MaxDIA NaN NaN NaN NaN 0 0 False False 0 6 3 32000 0 | ||
BoxCar MaxDIA NaN NaN NaN NaN 0 0 False False 0 0 0 0 0 |
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target/docker/maxquant/maxquant/settings/match_between_runs.tsv
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id matchingTimeWindow matchingIonMobilityWindow alignmentTimeWindow alignmentIonMobilityWindow | ||
TRUE 0.7 0.05 20 1 | ||
FALSE 0 0 0 0 |
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id msInstrument maxCharge minPeakLen diaMinPeakLen useMs1Centroids useMs2Centroids intensityDetermination centroidMatchTol valleyFactor advancedPeakSplitting intensityThresholdMs1 intensityThresholdMs2 mainSearchTol isotopeMatchTol isotopeMatchTolInPpm checkMassDeficit intensityDependentCalibration minScoreForCalibration diaTopNForQuant diaBackgroundSubtraction diaBackgroundSubtractionQuantile diaLfqWeightedMedian | ||
Orbitrap 0 7 2 1 False False 0 8 1.4 False 0 0 4.5 2 True True False 70 10 False 0.5 False | ||
Bruker Q-TOF 1 4 3 2 True True 3 10 1.2 True 30 30 10 0.005 False False True 40 10 False 0.5 True | ||
Sciex Q-TOF 2 4 2 2 False False 3 10 1.2 True 100 20 10 0.005 False False True 40 3 True 0.7 True | ||
Agilent Q-TOF 3 4 3 2 True True 3 10 1.2 True 0 0 10 0.005 False False True 40 10 False 0.5 True | ||
Bruker TIMS 4 4 2 2 False False 3 10 1.2 True 30 30 10 0.005 False False True 40 10 False 0.5 True |
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