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mspipelines 0.1.0
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@rcannood rcannood released this 17 Mar 11:20
· 168 commits to main since this release
0.1.0
954ef8f

Initial release of mspipeline

Components:

  • maxquant/maxquant: Running a MaxQuant analysis with mostly default parameters.
  • convert/maxquant_to_h5ad: Converting a MaxQuant output folder to an AnnData file.
  • download/sync_resources_test: Download testing resources from S3 to the resources_test/ directory.

Nextflow workflows:

  • maxquant: Starting from Thermo Raw files, run MaxQuant and convert the outputs to AnnData.
Assets 2
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