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mspipelines 0.3.2
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@rcannood rcannood released this 06 Dec 17:34
· 1 commit to release since this release
0.3.2
1c67f17

New functionality

  • proteomics/fastadl: Generates a FASTA sequence database for a given taxonomy using UniProtKB

Minor changes

  • msdial/msdial_gcms: Use parallel processing for processing input files.

  • msdial/msdial_lcms: Use parallel processing for processing input files.

  • maxquant/maxquant: The mqpar.xml is now generated by a jinja template
    instead of a lot of Python code.

  • maxquant/maxquant: Added parameters:

    • --ref_identifier_rule: The identifier parsing regex for the provided reference fastas. Length must be 1 or match that of the --reference argument.
    • --ref_description_rule: The description parsing regex for the provided reference fastas. Length must be 1 or match that of the --reference argument.
    • --ref_taxonomy_rule: The taxonomy parsing regex for the provided reference fastas. Length must be 1 or match that of the --reference argument.
    • --peptides_for_quantification: Specify how the protein ratios will be calculated.
    • --main_search_max_combinations: The maximum combinations during the main search.
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