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@fidelram fidelram released this 06 Nov 14:11
· 2097 commits to master since this release
1.8
760b6fa
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Learn about vigilant mode.

This release is adding new features and fixes many bugs:

  • hicBuildMatrix: Added multicore support, new parameters --threads and --inputBufferSize
  • hicFindTADs:
    • One call instead of two: hicFindTADs TAD_score and hicFindTADs find_TADs merged to hicFindTADs.
    • New multiple correction method supported: False discovery rate. Call it with --correctForMultipleTesting fdr and --threshold 0.05.
  • Update of the tutorial: mES-HiC analysis.
  • Additional test cases and docstrings to improve the software quality
  • Fixed a bug occurring with bigwig files with frequent NaN values which resulted in only NaN averages
  • hicPlotTADs: Support for plotting points
  • Moved galaxy wrappers to https://github.com/galaxyproject/tools-iuc
  • Fixed multiple bugs with saving matrices
  • hicCorrelate: Changes direction of dendograms to left
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