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@joachimwolff joachimwolff released this 05 Mar 20:14
· 1558 commits to master since this release
2.1
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Learn about vigilant mode.

The 2.1 version of HiCExplorer comes with new features and bugfixes.

  • Adding the new feature hicAggregateContacts: A tool that allows plotting of aggregated Hi-C sub-matrices of a specified list of positions.
  • Many improvements to the documentation and the help text. Thanks to @GinaRe and @gtrichard.
  • hicPlotMatrix:
    • supports only bigwig files for an additional data track.
    • the argument --pca was renamed to --bigwig
    • Smoothing the bigwig values to neighboring bins if no data is present there
    • Fixes to a bug concerning a crash of tight_layout
    • Adding the possibility to flip the sign of the values of the bigwig track
    • Adding the possibility to scale the values of the bigwig track
  • hicPlotViewpoint: Adds a feature to plot multiple matrices in one image
  • cooler file format:
    • supports mcool files
    • applies correction factors if present
    • optionally reads bin['weight']
  • fixes:
    • a crash in hicPlotTads if horizontal lines were used
    • checks if all characters of a title are ASCII. If not they are converted to the closest looking one.
  • Updated and fixate version number of the dependencies
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