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databases installation errors #237

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ncnlll opened this issue May 11, 2022 · 0 comments
Open

databases installation errors #237

ncnlll opened this issue May 11, 2022 · 0 comments

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@ncnlll
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ncnlll commented May 11, 2022

Hi Camille,
I installed dammit, but I get this error when I try to install databases. How can I fix it?
Thanks

dammit databases --install --database-dir /cluster_data/home/genomic/software/conda_env/dammit/databases_dir --busco-group metazoa

dammit

a tool for easy de novo transcriptome annotation

by Camille Scott

v1.2, 2018

submodule: databases

Database Install

Info

  • Database Directory: /cluster_data/home/genomic/software/conda_env/dammit/databases_dir
  • Doit Database: /cluster_data/home/genomic/software/conda_env/dammit/databases_dir/databases.doit.db

Some tasks out of date!

Out-of-date tasks:

  • cmpress:Rfam
  • download:BUSCO-metazoa
  • download:OrthoDB
  • download:Pfam-A
  • download:Rfam
  • download:sprot
  • gunzip:OrthoDB
  • gunzip:Pfam-A
  • gunzip:Rfam
  • hmmpress:Pfam-A
  • lastdb:OrthoDB
  • lastdb:sprot

Installing...

Run Tasks

Traceback (most recent call last):
File "/cluster_data/home/genomic/software/conda_env/dammit/lib/python3.8/site-packages/doit/doit_cmd.py", line 294, in run
return command.parse_execute(args)
File "/cluster_data/home/genomic/software/conda_env/dammit/lib/python3.8/site-packages/doit/cmd_base.py", line 150, in parse_execute
return self.execute(params, args)
File "/cluster_data/home/genomic/software/conda_env/dammit/lib/python3.8/site-packages/doit/cmd_base.py", line 525, in execute
dodo_config = self.loader.load_doit_config()
File "/cluster_data/home/genomic/software/conda_env/dammit/lib/python3.8/site-packages/doit/cmd_base.py", line 327, in load_doit_config
raise NotImplementedError() # pragma: no cover
NotImplementedError

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