15.0.58

• FASTA: New method (FAF) for better compressing FASTA files that contain sequencer reads (as opposed to assembled contigs), including support for --reference
• FASTA: genozip option --index now required in order to enable genocat --grep and --regions on files with more than 10,000 contigs (flles with less contigs are indexed by default)
• FASTQ/FASTA: better compression of interleaved data
• SAM/BAM: better compression of files containing OQ:Z
• VCF: better compression of files containing Mobile Elements data, and files generated by Illumina Starling
• bash: autocomplete of files and command line options in bash. .bashrc is modified during registration to activate the autocompletion. For existing users, you may manually add the following line to your .bashrc :
  source <...genozip-directory...>/autocomplete.sh ; complete -F _genozip genozip; complete -F _genounzip genounzip ; complete -F _genocat genocat ; complete -F _genols genols
• feature matrix changes: --optimize is now available only in Genozip Enterprise, Premium and Academic (not Genozip Standard) (no change for current Genozip Standard customers)
• some command line options renamed: --show-reference, --show-ref-contigs, show-ref-iupacs and --show-filename have been renamed to --print-reference, --print-ref-contigs, print-ref-iupacs and --print-filename respectively. The old names still work too, for backward compatability.
• new diagnostic options: --no-FAF and --no-interleaved to disable the FAF and Interleaved methods respectively ; --debug-upgrade