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env_full.yaml
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env_full.yaml
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name: ardap
channels:
- bioconda
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- art=3.19.15=1
- bcftools=1.9=h68d8f2e_9
- bedtools=2.28.0=hdf88d34_0
- bwa=0.7.18=he4a0461_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.9.24=ha878542_0
- cairo=1.14.8=0
- coreutils=8.25=1
- curl=7.86.0=h7bff187_1
- fasttree=2.1.11=h031d066_3
- fontconfig=2.12.1=3
- freetype=2.5.5=2
- gatk4=4.3.0.0=py36hdfd78af_0
- glib=2.50.2=1
- gsl=2.5=h294904e_1
- harfbuzz=0.9.39=2
- htslib=1.9=ha228f0b_7
- icu=54.1=0
- jbig=2.1=h7f98852_2003
- jpeg=8d=h166bdaf_1
- keyutils=1.6.1=h166bdaf_0
- kma=1.4.14=he4a0461_1
- krb5=1.19.3=h3790be6_0
- ld_impl_linux-64=2.39=hc81fddc_0
- libblas=3.9.0=16_linux64_openblas
- libcblas=3.9.0=16_linux64_openblas
- libcurl=7.86.0=h7bff187_1
- libdeflate=1.0=h14c3975_1
- libedit=3.1.20191231=h46ee950_2
- libev=4.33=h516909a_1
- libffi=3.2.1=he1b5a44_1007
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libgomp=12.2.0=h65d4601_19
- libiconv=1.14=4
- libnghttp2=1.47.0=hdcd2b5c_1
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.38=h753d276_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.0.6=2
- libxml2=2.9.4=0
- libzlib=1.2.13=h166bdaf_4
- mosdepth=0.3.3=hdfd78af_1
- ncurses=6.1=hf484d3e_1002
- nextflow=20.04.1=hecda079_1
- openjdk=8.0.332=h166bdaf_0
- openssl=1.1.1s=h166bdaf_0
- pango=1.40.3=1
- pcre=8.39=0
- perl=5.32.1=2_h7f98852_perl5
- picard=2.27.5=hdfd78af_0
- pindel=0.2.5b9=he527e40_3
- pip=22.3.1=pyhd8ed1ab_0
- pixman=0.34.0=h14c3975_1003
- python=3.8.5=h4d41432_2_cpython
- r-base=3.3.2=0
- readline=8.0=h46ee950_1
- samtools=1.9=h10a08f8_12
- seqtk=1.4=he4a0461_2
- setuptools=65.5.1=pyhd8ed1ab_0
- snpeff=4.3.1t=hdfd78af_5
- sqlite=3.32.3=hcee41ef_1
- tk=8.6.12=h27826a3_0
- trimmomatic=0.39=hdfd78af_2
- wheel=0.38.4=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- zlib=1.2.13=h166bdaf_4
- pip:
- biopython==1.83
- cgecore==1.5.6
- gitdb==4.0.11
- gitpython==3.1.43
- numpy==1.24.4
- python-dateutil==2.9.0.post0
- six==1.16.0
- smmap==5.0.1
- tabulate==0.9.0