cell2cell - v0.6.4

Please refer to the release notes here.

Release Notes - cell2cell v0.6.4

New features

• Added a the cell2cell.io.read_data.load_tensor() function to directly load a previously
  exported interaction_tensor variable generated with Tensor-cell2cell.
• Added a new dataset from a COVID-19 study. Available in cell2cell.datasets.anndata.balf_covid().
• Added functions to create and explore directories in cell2cell.io.directories.
• Added cell2cell.io.read_data.load_tables_from_directory() to load all tables or dataframes with the same
  extension that are located in such directory.

Feature updates

• Modified sparsity_fraction() and missing_fraction() methods of cell2cell.tensor.tensor.BaseTensor to return
  the item in the tensorly tensor object.
• Added progress bar to cell2cell.tensor.external_scores.dataframes_to_tensor().
• Added the option to specify the backend when running cell2cell.analysis.tensor_pipelines.run_tensor_cell2cell_pipeline().

Fixed Bugs

• Implemented a way to manage duplicated instances of a LR comm score in cell2cell.tensor.external_scores.dataframes_to_tensor().
  It can be controled through the parameter dup_aggregation.

What's Changed

• Code restructuring by @earmingol in #3
• Added core pipeline by @earmingol in #4
• Code reorganization by @earmingol in #5
• v0.5.10 by @earmingol in #8
• New version - v0.5.11 by @earmingol in #11
• Updates for v0.6.0 by @earmingol in #12
• Updates for v0.6.1 by @earmingol in #15
• Updates for v0.6.2 by @earmingol in #17
• Updates for v0.6.3 by @earmingol in #18
• Quick rebase by @earmingol in #20
• Updates for v0.6.4 by @earmingol in #21

New Contributors

• @earmingol made their first contribution in #3

Full Changelog: https://github.com/earmingol/cell2cell/commits/v0.6.4