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to create and push experimental docker image
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,71 @@ | ||
| #!/bin/bash | ||
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| # Read in ARG0 | ||
| STARTSERVER="$1"; | ||
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| # Always swap to /scripts | ||
| cd /scripts | ||
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| # Always expand the enviroment | ||
| set -e | ||
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| # Incase this is a volume mount move | ||
| if [ -f "/scripts/.pginit" ]; then | ||
| STARTSERVER="SPAWNSET" | ||
| fi | ||
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| if [[ -z "$STARTSERVER" ]]; then | ||
| echo "No runmode specified!" | ||
| exit 0 | ||
| else | ||
| echo "Running mode: $STARTSERVER" | ||
| fi | ||
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| # If we are in setup, init the db and install the required databases | ||
| # and modules | ||
| if [ $STARTSERVER == "INIT" ]; then | ||
| sh -c 'pg_ctl initdb -D ${PGDATA}' | ||
| elif [ "$STARTSERVER" == "START" ]; then | ||
| sh -c 'pg_ctl start -D ${PGDATA}' | ||
| elif [ "$STARTSERVER" == "WAIT" ]; then | ||
| LOOPRUN=0 | ||
| while [ "$LOOPRUN" != 1 ]; do | ||
| sleep 1 | ||
| LOOPRUN=$(perl -e 'print `psql -AtXq -U postgres -d template1 -c "SELECT 1"`') | ||
| done | ||
| echo "Primary database initilization complete!" | ||
| elif [ "$STARTSERVER" == "STOP" ]; then | ||
| sh -c 'pg_ctl stop -D ${PGDATA}' | ||
| elif [ "$STARTSERVER" == "SETUP" ]; then | ||
| # Totally remove the PGDATA to force re-init on image start | ||
| rm -Rf "${PGDATA}" | ||
| elif [ "$STARTSERVER" == "SPAWNSET" ]; then | ||
| # If this is a move, then there will be no PGDATA/.spawn | ||
| if [ -f "${PGDATA}/.spawn" ]; then | ||
| exit 0; | ||
| fi | ||
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| # Execute the DB init scripts, we are already the postgres user | ||
| # Add in MD5 auth | ||
| echo "listen_addresses='*'" >> ${PGDATA}/postgresql.conf | ||
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| echo "Running temporal table test" | ||
| eval ./test-temporal-tables.sh | ||
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| echo "Running: create-ehrbase-user" | ||
| eval ./create-ehrbase-user.sh | ||
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| echo "Creating default databases" | ||
| eval ./prepare-databases.sh | ||
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| # To stop looping init | ||
| echo "DONE" > "${PGDATA}/.spawn" | ||
| echo "Restarting server" | ||
| sh -c "/scripts/chain-load.sh stop" | ||
| sh -c "/scripts/chain-load.sh start" | ||
| elif [ "$STARTSERVER" == "PASSRESET" ]; then | ||
| echo "Running: password-recrypt-set" | ||
| eval ./password-recrypt-set.sh | ||
| else | ||
| echo "Unknown action '$STARTSERVER' called." | ||
| fi; |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,12 +1,10 @@ | ||
| #!/bin/bash | ||
| set -e | ||
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| psql --username "$POSTGRES_USER" --dbname "$POSTGRES_DB" <<-EOSQL | ||
| CREATE ROLE ${EHRBASE_USER} LOGIN PASSWORD '${EHRBASE_PASSWORD}'; | ||
| CREATE DATABASE ehrbase ENCODING 'UTF-8' TEMPLATE template0; | ||
| GRANT ALL PRIVILEGES ON DATABASE ehrbase TO ${EHRBASE_USER}; | ||
| CREATE USER root WITH SUPERUSER; | ||
| EOSQL | ||
| echo "Creating user(${EHRBASE_USER}) pass(${EHRBASE_PASSWORD}) db(ehrbase)" | ||
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| # Stop database before proceeding | ||
| su - postgres -c "pg_ctl -D ${PGDATA} -w stop" | ||
| psql -U "${POSTGRES_USER}" -d "${POSTGRES_DB}" <<-EOSQL | ||
| CREATE ROLE ${EHRBASE_USER} WITH LOGIN PASSWORD '${EHRBASE_PASSWORD}'; | ||
| CREATE DATABASE ehrbase ENCODING 'UTF-8' TEMPLATE template0; | ||
| GRANT ALL PRIVILEGES ON DATABASE ehrbase TO ${EHRBASE_USER}; | ||
| CREATE USER root WITH SUPERUSER; | ||
| EOSQL |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,95 @@ | ||
| # PostgreSQL Client Authentication Configuration File | ||
| # =================================================== | ||
| # | ||
| # Refer to the "Client Authentication" section in the PostgreSQL | ||
| # documentation for a complete description of this file. A short | ||
| # synopsis follows. | ||
| # | ||
| # This file controls: which hosts are allowed to connect, how clients | ||
| # are authenticated, which PostgreSQL user names they can use, which | ||
| # databases they can access. Records take one of these forms: | ||
| # | ||
| # local DATABASE USER METHOD [OPTIONS] | ||
| # host DATABASE USER ADDRESS METHOD [OPTIONS] | ||
| # hostssl DATABASE USER ADDRESS METHOD [OPTIONS] | ||
| # hostnossl DATABASE USER ADDRESS METHOD [OPTIONS] | ||
| # | ||
| # (The uppercase items must be replaced by actual values.) | ||
| # | ||
| # The first field is the connection type: "local" is a Unix-domain | ||
| # socket, "host" is either a plain or SSL-encrypted TCP/IP socket, | ||
| # "hostssl" is an SSL-encrypted TCP/IP socket, and "hostnossl" is a | ||
| # plain TCP/IP socket. | ||
| # | ||
| # DATABASE can be "all", "sameuser", "samerole", "replication", a | ||
| # database name, or a comma-separated list thereof. The "all" | ||
| # keyword does not match "replication". Access to replication | ||
| # must be enabled in a separate record (see example below). | ||
| # | ||
| # USER can be "all", a user name, a group name prefixed with "+", or a | ||
| # comma-separated list thereof. In both the DATABASE and USER fields | ||
| # you can also write a file name prefixed with "@" to include names | ||
| # from a separate file. | ||
| # | ||
| # ADDRESS specifies the set of hosts the record matches. It can be a | ||
| # host name, or it is made up of an IP address and a CIDR mask that is | ||
| # an integer (between 0 and 32 (IPv4) or 128 (IPv6) inclusive) that | ||
| # specifies the number of significant bits in the mask. A host name | ||
| # that starts with a dot (.) matches a suffix of the actual host name. | ||
| # Alternatively, you can write an IP address and netmask in separate | ||
| # columns to specify the set of hosts. Instead of a CIDR-address, you | ||
| # can write "samehost" to match any of the server's own IP addresses, | ||
| # or "samenet" to match any address in any subnet that the server is | ||
| # directly connected to. | ||
| # | ||
| # METHOD can be "trust", "reject", "md5", "password", "scram-sha-256", | ||
| # "gss", "sspi", "ident", "peer", "pam", "ldap", "radius" or "cert". | ||
| # Note that "password" sends passwords in clear text; "md5" or | ||
| # "scram-sha-256" are preferred since they send encrypted passwords. | ||
| # | ||
| # OPTIONS are a set of options for the authentication in the format | ||
| # NAME=VALUE. The available options depend on the different | ||
| # authentication methods -- refer to the "Client Authentication" | ||
| # section in the documentation for a list of which options are | ||
| # available for which authentication methods. | ||
| # | ||
| # Database and user names containing spaces, commas, quotes and other | ||
| # special characters must be quoted. Quoting one of the keywords | ||
| # "all", "sameuser", "samerole" or "replication" makes the name lose | ||
| # its special character, and just match a database or username with | ||
| # that name. | ||
| # | ||
| # This file is read on server startup and when the server receives a | ||
| # SIGHUP signal. If you edit the file on a running system, you have to | ||
| # SIGHUP the server for the changes to take effect, run "pg_ctl reload", | ||
| # or execute "SELECT pg_reload_conf()". | ||
| # | ||
| # Put your actual configuration here | ||
| # ---------------------------------- | ||
| # | ||
| # If you want to allow non-local connections, you need to add more | ||
| # "host" records. In that case you will also need to make PostgreSQL | ||
| # listen on a non-local interface via the listen_addresses | ||
| # configuration parameter, or via the -i or -h command line switches. | ||
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| # CAUTION: Configuring the system for local "trust" authentication | ||
| # allows any local user to connect as any PostgreSQL user, including | ||
| # the database superuser. If you do not trust all your local users, | ||
| # use another authentication method. | ||
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| # TYPE DATABASE USER ADDRESS METHOD | ||
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| # "local" is for Unix domain socket connections only | ||
| local all all trust | ||
| # IPv4 local connections: | ||
| host all all 127.0.0.1/32 trust | ||
| # IPv6 local connections: | ||
| host all all ::1/128 trust | ||
| # Allow replication connections from localhost, by a user with the | ||
| # replication privilege. | ||
| local replication all trust | ||
| host replication all 127.0.0.1/32 trust | ||
| host replication all ::1/128 trust | ||
| # Require MD5 auth for all other connections | ||
| host all all 0.0.0.0/0 md5 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,21 +1,15 @@ | ||
| #!/bin/bash | ||
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| set -e | ||
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| # Start server | ||
| su - postgres -c "pg_ctl -D ${PGDATA} -w start" | ||
| echo "Creating schemas" | ||
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| # Setup schemas and activate extensions | ||
| psql --username="$POSTGRES_USER" --dbname "ehrbase" <<-EOSQL | ||
| CREATE SCHEMA IF NOT EXISTS ehr AUTHORIZATION "$EHRBASE_USER"; | ||
| CREATE SCHEMA IF NOT EXISTS ext AUTHORIZATION "$EHRBASE_USER"; | ||
| CREATE EXTENSION IF NOT EXISTS "uuid-ossp" SCHEMA ext; | ||
| CREATE EXTENSION IF NOT EXISTS "temporal_tables" SCHEMA ext; | ||
| CREATE EXTENSION IF NOT EXISTS "jsquery" SCHEMA ext; | ||
| CREATE EXTENSION IF NOT EXISTS "ltree" SCHEMA ext; | ||
| ALTER DATABASE ehrbase SET search_path to "$EHRBASE_USER",public,ext; | ||
| GRANT ALL ON ALL FUNCTIONS IN SCHEMA ext TO $EHRBASE_USER; | ||
| EOSQL | ||
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| # Stop server | ||
| su - postgres -c "pg_ctl -D ${PGDATA} -w stop" | ||
| CREATE SCHEMA IF NOT EXISTS ehr AUTHORIZATION "$EHRBASE_USER"; | ||
| CREATE SCHEMA IF NOT EXISTS ext AUTHORIZATION "$EHRBASE_USER"; | ||
| CREATE EXTENSION IF NOT EXISTS "uuid-ossp" SCHEMA ext; | ||
| CREATE EXTENSION IF NOT EXISTS "temporal_tables" SCHEMA ext; | ||
| CREATE EXTENSION IF NOT EXISTS "jsquery" SCHEMA ext; | ||
| CREATE EXTENSION IF NOT EXISTS "ltree" SCHEMA ext; | ||
| ALTER DATABASE ehrbase SET search_path to "$EHRBASE_USER",public,ext; | ||
| GRANT ALL ON ALL FUNCTIONS IN SCHEMA ext TO $EHRBASE_USER; | ||
| EOSQL |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| #!/bin/bash | ||
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| cd /scripts/temporal_tables | ||
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| # Build from source | ||
| make installcheck |