Initial commit

.github/dependabot.yml

@@ -0,0 +1,19 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: "maven" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"
+    ignore:
+      - dependency-name: "*"
+        update-types: ["version-update:semver-major"]
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      # Check for updates to GitHub Actions every week
+      interval: "weekly"

.github/workflows/build-and-push.yml

@@ -0,0 +1,73 @@
+name: Build and push
+
+on:
+  push:
+    branches:
+      - master
+      - develop
+  pull_request:
+    branches:
+      - master
+      - develop
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        java: [ '21' ]
+
+    steps:
+      # Install the migration tool in the local repo
+      - name: Checkout Migration Tool
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+          repository: ehrbase/migration-tool
+          ref: develop
+          # This will be used by git in all further steps
+          # We need a PERSONAL ACCESS TOKEN so pushes trigger other github actions
+          token: ${{ secrets.PERSONAL_ACCESS_TOKEN }}
+
+      - name: Setup Java
+        uses: actions/setup-java@v4
+        with:
+          distribution: 'temurin'
+          java-version: ${{ matrix.java }}
+          cache: 'maven'
+
+      - name: Install Migration Tool
+        run: mvn install
+
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Login to GitLab
+        uses: docker/login-action@v3
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_PASSWORD }}
+
+      - name: Setup Java
+        uses: actions/setup-java@v4
+        with:
+          distribution: 'temurin'
+          java-version: ${{ matrix.java }}
+          cache: 'maven'
+      - name: Spotless
+        run: mvn spotless:check
+      - name: install migration tool main
+        run: mvn install -Dmaven.test.skip=true
+
+
+      - name: Build with Maven
+        run: mvn clean verify spring-boot:build-image
+
+      - name: Build and push
+        if: ${{ github.ref == 'ref/head/develop' }} || ${{ github.ref == 'ref/head/master' }} || ${{ github.ref == 'ref/head/main' }}
+        run: |
+          VERSION=$(mvn help:evaluate -Dexpression=project.version -q -DforceStdout)       
+          docker push ehrbase/migration-tool:${VERSION}
+  

LICENSE

@@ -186,7 +186,7 @@
       same "printed page" as the copyright notice for easier
       identification within third-party archives.
 
-   Copyright [yyyy] [name of copyright owner]
+   Copyright 2024 vitasystems GmbH
 
    Licensed under the Apache License, Version 2.0 (the "License");
    you may not use this file except in compliance with the License.

application/pom.xml

@@ -0,0 +1,208 @@
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
+  <modelVersion>4.0.0</modelVersion>
+
+  <parent>
+    <groupId>org.springframework.boot</groupId>
+    <artifactId>spring-boot-starter-parent</artifactId>
+    <version>3.2.5</version>
+    <relativePath/>
+  </parent>
+
+  <groupId>org.ehrbase.migration</groupId>
+  <artifactId>migration-application</artifactId>
+  <version>1.1.0-SNAPSHOT</version>
+  <packaging>jar</packaging>
+  <name>EHRbase Migration Tool Application</name>
+
+  <properties>
+    <image.name>dockerhub.io/ehrbase/migration-tool</image.name>
+    <image.tag>${project.version}</image.tag>
+    <maven.compiler.source>21</maven.compiler.source>
+    <maven.compiler.target>21</maven.compiler.target>
+    <java.version>21</java.version>
+  </properties>
+
+  <dependencyManagement>
+    <dependencies>
+      <dependency>
+        <groupId>org.ehrbase.migration</groupId>
+        <artifactId>migration-bom</artifactId>
+        <version>${project.version}</version>
+        <type>pom</type>
+        <scope>import</scope>
+      </dependency>
+    </dependencies>
+  </dependencyManagement>
+
+
+  <dependencies>
+
+    <dependency>
+      <groupId>org.ehrbase.migration</groupId>
+      <artifactId>migration-service</artifactId>
+      <version>${project.version}</version>
+    </dependency>
+    <dependency>
+      <groupId>org.springframework.boot</groupId>
+      <artifactId>spring-boot-starter-test</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>org.testcontainers</groupId>
+      <artifactId>junit-jupiter</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>org.wiremock</groupId>
+      <artifactId>wiremock</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>io.jsonwebtoken</groupId>
+      <artifactId>jjwt-impl</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>io.jsonwebtoken</groupId>
+      <artifactId>jjwt-jackson</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>org.mock-server</groupId>
+      <artifactId>mockserver-junit-jupiter</artifactId>
+    </dependency>
+    <dependency>
+      <groupId>com.nimbusds</groupId>
+      <artifactId>nimbus-jose-jwt</artifactId>
+    </dependency>
+  </dependencies>
+
+  <build>
+    <finalName>migration-tool</finalName>
+    <plugins>
+      <plugin>
+        <groupId>org.apache.maven.plugins</groupId>
+        <artifactId>maven-compiler-plugin</artifactId>
+        <configuration>
+          <compilerArgs>
+            <arg>-parameters</arg>
+          </compilerArgs>
+        </configuration>
+      </plugin>
+      <plugin>
+        <groupId>com.diffplug.spotless</groupId>
+        <artifactId>spotless-maven-plugin</artifactId>
+        <version>2.43.0</version>
+        <configuration>
+          <java>
+            <toggleOffOn>
+              <off>@format:off</off>
+              <on>@format:on</on>
+            </toggleOffOn>
+            <palantirJavaFormat>
+              <version>2.40.0</version>
+            </palantirJavaFormat>
+            <licenseHeader>
+              <file>../spotless-lic-header</file>
+            </licenseHeader>
+          </java>
+        </configuration>
+      </plugin>
+      <plugin>
+        <groupId>org.springframework.boot</groupId>
+        <artifactId>spring-boot-maven-plugin</artifactId>
+        <executions>
+          <execution>
+            <goals>
+              <goal>repackage</goal>
+            </goals>
+          </execution>
+        </executions>
+        <configuration>
+          <mainClass>org.ehrbase.migration.application.MigrationTool</mainClass>
+          <image>
+            <name>${image.name}:${image.tag}</name>
+            <env>
+              <BP_DEBUG_ENABLED>true</BP_DEBUG_ENABLED>
+            </env>
+          </image>
+          <skip>false</skip>
+        </configuration>
+      </plugin>
+      <plugin>
+        <groupId>org.jacoco</groupId>
+        <artifactId>jacoco-maven-plugin</artifactId>
+        <version>0.8.12</version>
+        <executions>
+          <!-- SET ARG LINE PROPERTY FOR SUREFIRE -->
+          <execution>
+            <id>agent for unit tests</id>
+            <goals>
+              <goal>prepare-agent</goal>
+            </goals>
+            <configuration>
+              <propertyName>surefireArgLine</propertyName>
+            </configuration>
+          </execution>
+          <!-- SET ARG LINE PROPERTY FOR FAILSAFE -->
+          <execution>
+            <id>agent for integration tests</id>
+            <goals>
+              <goal>prepare-agent-integration</goal>
+            </goals>
+            <configuration>
+              <propertyName>failsafeArgLine</propertyName>
+            </configuration>
+          </execution>
+        </executions>
+      </plugin>
+      <plugin>
+        <groupId>org.apache.maven.plugins</groupId>
+        <artifactId>maven-surefire-plugin</artifactId>
+        <configuration>
+          <!-- SETS THE VM ARGUMENT LINE USED WHEN UNIT TESTS ARE RUN. -->
+          <argLine>@{surefireArgLine}</argLine>
+        </configuration>
+        <executions>
+          <execution>
+            <phase>test</phase>
+            <goals>
+              <goal>test</goal>
+            </goals>
+          </execution>
+        </executions>
+      </plugin>
+      <plugin>
+        <groupId>org.apache.maven.plugins</groupId>
+        <artifactId>maven-failsafe-plugin</artifactId>
+        <executions>
+          <execution>
+            <id>integration-test</id>
+            <phase>verify</phase>
+            <goals>
+              <goal>integration-test</goal>
+              <goal>verify</goal>
+            </goals>
+            <configuration>
+              <!-- SETS THE VM ARGUMENT LINE USED WHEN INTEGRATION TESTS ARE RUN. -->
+              <argLine>@{failsafeArgLine}</argLine>
+              <includes>
+                <include>**/*IT.java</include>
+              </includes>
+            </configuration>
+          </execution>
+        </executions>
+      </plugin>
+
+      <plugin>
+        <groupId>org.apache.maven.plugins</groupId>
+        <artifactId>maven-jar-plugin</artifactId>
+        <version>3.3.0</version>
+        <executions>
+          <execution>
+            <goals>
+              <goal>test-jar</goal>
+            </goals>
+          </execution>
+        </executions>
+      </plugin>
+    </plugins>
+  </build>
+
+</project>

application/src/main/java/org/ehrbase/migration/application/MigrationTool.java

@@ -0,0 +1,81 @@
+/*
+ * Copyright (c) 2023 vitasystems GmbH
+ *
+ * This file is part of project EHRbase Migration Tool
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     https://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.ehrbase.migration.application;
+
+import org.ehrbase.migration.service.ProcessService;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import org.springframework.beans.factory.annotation.Value;
+import org.springframework.boot.CommandLineRunner;
+import org.springframework.boot.SpringApplication;
+import org.springframework.boot.WebApplicationType;
+import org.springframework.boot.autoconfigure.SpringBootApplication;
+import org.springframework.boot.builder.SpringApplicationBuilder;
+import org.springframework.context.ConfigurableApplicationContext;
+
+@SpringBootApplication(scanBasePackages = "org.ehrbase.migration")
+public class MigrationTool implements CommandLineRunner {
+
+    public enum MigrationMode {
+        DB2DB,
+        IMPORT,
+        EXPORT,
+        NONE
+    }
+
+    @Value("${mode}")
+    private MigrationMode mode;
+
+    @Value("${terminate:true}")
+    private boolean terminate;
+
+    private static Logger LOG = LoggerFactory.getLogger(MigrationTool.class);
+
+    private final ConfigurableApplicationContext context;
+
+    private final ProcessService processService;
+
+    public MigrationTool(ProcessService processService, ConfigurableApplicationContext context) {
+        this.processService = processService;
+        this.context = context;
+    }
+
+    public static void main(String[] args) {
+        LOG.info("STARTING THE APPLICATION");
+        new SpringApplicationBuilder(MigrationTool.class)
+                .web(WebApplicationType.NONE)
+                .run(args);
+    }
+
+    @Override
+    public void run(String... args) {
+
+        switch (mode) {
+            case DB2DB -> processService.db2db();
+            case IMPORT -> processService.importFromFile();
+            case EXPORT -> processService.exportToFile();
+            case NONE -> LOG.info("Migration mode NONE: Skipping");
+        }
+        if (terminate) {
+            LOG.debug("Shutting down");
+            int exitCode = SpringApplication.exit(context);
+            LOG.info("APPLICATION FINISHED");
+            System.exit(exitCode);
+        }
+    }
+}