refactor(1089): update index types from int to size_t #3053

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Job	Run time
build_mac_builtin_tbb	3m 25s
build_mac (OFF)	3m 59s
CrossSection:ON false GCC 13	3m 57s
build_mac (ON)	2m 53s
build_cbind	3m 7s
CrossSection:ON false GCC 14	3m 58s
build_mac_builtin_tbb_subdir	1m 27s
CrossSection:ON true GCC 13	3m 53s
build_mxe (OFF)	3m 31s
CrossSection:ON true GCC 14	3m 57s
build_nix (manifold-none)	1m 15s
build_wasm (OFF)	3m 53s
build_mxe (ON)	3m 48s
CrossSection:OFF true GCC 14	3m 56s
build_nix (manifold-tbb)	1m 52s
build_wasm (ON)	3m 55s
build_nix (manifold-js)	3m 59s
build_windows (OFF)	2m 27s
build_nix (manifold-js-tbb)	3m 59s
build_windows (ON)	2m 1s
build_nix (manifold3d)	2m 3s
	1h 7m 15s