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  • mkbaybe Public

    Forked from emdgroup/baybe

    Bayesian Optimization and Design of Experiments

    Python Apache License 2.0 Updated Oct 25, 2024
  • Personal website using R Markdown & Hugo.

    SCSS Updated Sep 25, 2024
  • deepchem Public

    Forked from deepchem/deepchem

    Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

    Python MIT License Updated Aug 24, 2024
  • Graph representation learning modelling pipeline exploiting sample-similarity networks derived from high-throughput omics profiles to learn PD-specific fingerprints in an end-to-end fashion. It is …

    Python 1 MIT License Updated Aug 7, 2024
  • Analyze the effect of gene knockouts on single-cell gene expression data using pre-trained foundation models. Compare embeddings before and after knockout and classify the samples.

    Jupyter Notebook Updated Jul 30, 2024
  • Protein language model for binding site prediction

    Jupyter Notebook Updated May 27, 2024
  • funOmics Public

    Aggregates or summarizes omics data into higher level functional representations such as GO terms gene sets or KEGG metabolic pathways, facilitating the analysis of functional molecular sets that a…

    R 5 MIT License Updated May 15, 2024
  • My personal repository.

    Updated May 6, 2024
  • TypeScript Updated Apr 29, 2024
  • Graph representation learning modelling pipeline exploiting molecular interaction networks derived from high-throughput omics profiles to learn PD-specific fingerprints in an end-to-end fashion. It…

    Jupyter Notebook 2 MIT License Updated Jan 24, 2024
  • ML models for Parkinson's disease case-control classification using blood-based transcriptomics and metabolomics measurements at the baseline clinical visit along with dynamic features engineered f…

    Jupyter Notebook MIT License Updated Jan 17, 2024
  • ML models to predict motor ability scores (UPDRS III) in Parkinson's disease using blood-based transcriptomics and metabolomics profiles. Leveraging baseline and temporal features engineered from s…

    Jupyter Notebook MIT License Updated Jan 17, 2024
  • NestedCV Public

    Package and environment with the NestedCV() class - a scikit-learn compatible class for nested cross-validation.

    Python 1 1 BSD 3-Clause "New" or "Revised" License Updated Jan 16, 2024
  • Statistical analyses for cross-sectional and longitudinal profiling of Parkinson's disease patients and controls transcriptomics and metabolomics from the PPMI cohort and the LuxPARK cohort respect…

    R MIT License Updated Jan 16, 2024
  • A playbook for systematically maximizing the performance of deep learning models.

    Other Updated Jan 25, 2023
  • Some of the scripts developed in Pharmacelera S.L. for my Master Thesis (Parametrization of atom-types LogP-based hydrophobic descriptors for virtual screening). The project was developed within th…

    Python 2 Updated Dec 27, 2022
  • Jupyter notebooks for learning and having an overview of Pandas library and Plotly with some exercises

    Jupyter Notebook Updated Dec 27, 2022
  • Datatathon Critical Care Tarragona 2018

    Jupyter Notebook Updated Dec 27, 2022
  • Deep learning specialization on coursera consists on a series of 5 courses: Neural Networks and deep learning / Improving Deep Neural Networks: Hyperparameter tuning, Regularization and Optimizatio…

    Jupyter Notebook Updated Dec 27, 2022
  • Basics of data wrangling in R with the 'tidyverse'

    Updated Dec 27, 2022
  • CS224W Stanford 2019fall -- Machine Learning with Graphs.

    Jupyter Notebook 1 Updated Oct 1, 2022
  • Jupyter Notebook Other Updated Sep 2, 2022
  • PyTorch tutorials.

    Python BSD 3-Clause "New" or "Revised" License Updated Aug 16, 2022
  • Histopathological cancer detection from kaggle competition

    Jupyter Notebook 1 Updated Sep 9, 2020
  • Spin off the datathon Tarragona 2018 challenge

    Jupyter Notebook 1 Updated Jan 27, 2019
  • ML basis scripts

    Jupyter Notebook Updated Jan 6, 2019
  • Repo containing SAS papers and scripts hopefully useful for SAS beginners

    SAS Updated Nov 7, 2018