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Moving reliance on numpy and scipy sparse matrices to methods that ca… #620

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Canceling since a higher priority waiting request for 'GitHub Branch CI-refs/heads/templatized-writer-esj' exists

No such keg: /usr/local/Cellar/bash

No such keg: /usr/local/Cellar/glpk

No such keg: /usr/local/Cellar/ginac

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