Make empymod a hard dependency #466
Workflow file for this run
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name: linux | |
# Only build PRs, the main branch, and releases. | |
on: | |
pull_request: | |
push: | |
branches: | |
- main | |
release: | |
types: | |
- published | |
schedule: | |
- cron: "14 14 20 * *" | |
# Use bash by default in all jobs | |
defaults: | |
run: | |
# Using "-l {0}" is necessary for conda environments to be activated | |
# But this breaks on MacOS if using actions/setup-python: | |
# https://github.com/actions/setup-python/issues/132 | |
shell: bash | |
# Cancel any previous run of the test job. | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test: | |
name: ${{ matrix.case.os }} py${{ matrix.case.python-version }} ${{ matrix.case.name }} | |
runs-on: ${{ matrix.case.os }}-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu, ] # macos, windows] # Only Linux currently. | |
case: | |
- python-version: "3.9" | |
name: minimal | |
os: ubuntu | |
conda: "'scipy=1.9' 'numba=0.53'" | |
- python-version: "3.10" | |
name: full | |
os: ubuntu | |
conda: "numba scipy xarray h5py discretize matplotlib" # tqdm | |
- python-version: "3.10" | |
name: plain | |
os: ubuntu | |
conda: "numba scipy" | |
- python-version: "3.11" | |
name: plain | |
os: ubuntu | |
conda: "numba scipy" | |
- python-version: "3.11" | |
name: full | |
os: ubuntu | |
conda: "numba scipy xarray tqdm h5py discretize matplotlib" | |
- python-version: "3.12" | |
name: plain | |
os: ubuntu | |
conda: "numba scipy" | |
- python-version: "3.12" | |
name: full | |
os: ubuntu | |
conda: "numba scipy xarray tqdm h5py discretize matplotlib" | |
env: | |
# Used for coveralls flag | |
OS: ${{ matrix.case.os }} | |
PYTHON: ${{ matrix.case.python-version }} | |
steps: | |
# Checks-out your repository under $GITHUB_WORKSPACE | |
- name: Checkout | |
uses: actions/checkout@v4 | |
with: | |
# Need to fetch more than the last commit so that setuptools-scm can | |
# create the correct version string. If the number of commits since | |
# the last release is greater than this, the version still be wrong. | |
# Increase if necessary. | |
fetch-depth: 100 | |
# The GitHub token is preserved by default but this job doesn't need | |
# to be able to push to GitHub. | |
persist-credentials: false | |
# Need the tags so that setuptools-scm can form a valid version number | |
- name: Fetch git tags | |
run: git fetch origin 'refs/tags/*:refs/tags/*' | |
- name: Setup miniconda | |
uses: conda-incubator/setup-miniconda@v3 | |
with: | |
auto-update-conda: true | |
python-version: ${{ matrix.case.python-version }} | |
miniforge-version: "latest" | |
miniforge-variant: Mambaforge | |
use-mamba: true | |
- name: Install dependencies | |
shell: bash -l {0} | |
run: | | |
conda config --set always_yes yes --set changeps1 no | |
conda config --show-sources | |
conda config --show | |
conda info -a | |
conda install ${{ matrix.case.conda }} pytest pytest-cov pytest-console-scripts coveralls flake8 setuptools-scm | |
- name: Conda list | |
shell: bash -l {0} | |
run: conda list | |
- name: Flake8 | |
shell: bash -l {0} | |
run: flake8 docs/ setup.py emg3d/ tests/ | |
- name: Test with pytest | |
shell: bash -l {0} | |
run: | | |
python -m pip install . | |
pytest --cov=emg3d | |
- name: Coveralls | |
# [pin v20201129] | |
uses: AndreMiras/coveralls-python-action@f5fd5c309b39d01599fb92c72d4f7409ea78aec9 | |
# v Did not work when tried; final coverage was wrong v | |
# uses: coverallsapp/github-action@v2 | |
with: | |
parallel: true | |
flag-name: ${{ matrix.case.python-version }} ${{ matrix.case.name }} (${{ matrix.case.os }}) | |
coveralls_finish: | |
needs: test | |
runs-on: ubuntu-latest | |
steps: | |
- name: Coveralls Finished | |
# [pin v20201129] | |
uses: AndreMiras/coveralls-python-action@f5fd5c309b39d01599fb92c72d4f7409ea78aec9 | |
# v Did not work when tried; final coverage was wrong v | |
# uses: coverallsapp/github-action@v2 | |
with: | |
parallel-finished: true | |
deploy: | |
needs: test | |
name: Deploy to PyPI | |
runs-on: ubuntu-latest | |
# Only from the origin repository, not forks; only main and tags. | |
if: github.repository_owner == 'emsig' && (github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/')) | |
steps: | |
# Checks-out your repository under $GITHUB_WORKSPACE | |
- name: Checkout | |
uses: actions/checkout@v4 | |
with: | |
# Need to fetch more than the last commit so that setuptools-scm can | |
# create the correct version string. If the number of commits since | |
# the last release is greater than this, the version will still be | |
# wrong. Increase if necessary. | |
fetch-depth: 100 | |
# The GitHub token is preserved by default but this job doesn't need | |
# to be able to push to GitHub. | |
persist-credentials: false | |
# Need the tags so that setuptools-scm can form a valid version number | |
- name: Fetch git tags | |
run: git fetch origin 'refs/tags/*:refs/tags/*' | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: "3.9" | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install build setuptools-scm | |
- name: Build source and wheel distributions | |
if: github.ref == 'refs/heads/main' | |
run: | | |
# Change setuptools-scm local_scheme to "no-local-version" so the | |
# local part of the version isn't included, making the version string | |
# compatible with Test PyPI. | |
sed --in-place 's/"root"/"local_scheme":"no-local-version","root"/g' setup.py | |
- name: Build source and wheel distributions | |
run: | | |
# Build source and wheel packages | |
python -m build | |
echo "" | |
echo "Generated files:" | |
ls -lh dist/ | |
- name: Publish to Test PyPI | |
if: success() | |
uses: pypa/gh-action-pypi-publish@release/v1 | |
with: | |
user: __token__ | |
password: ${{ secrets.TEST_PYPI_PASSWORD }} | |
repository-url: https://test.pypi.org/legacy/ | |
# Allow existing releases on test PyPI without errors. | |
# NOT TO BE USED in PyPI! | |
skip-existing: true | |
- name: Publish to PyPI | |
# Only for releases | |
if: success() && github.event_name == 'release' | |
uses: pypa/gh-action-pypi-publish@release/v1 | |
with: | |
user: __token__ | |
password: ${{ secrets.PYPI_PASSWORD }} |