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54 Open 212 Closed
54 Open 212 Closed
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Issues list

Leiden based clustering
#272 opened Oct 18, 2024 by JensFGG
ERROR: dependency ‘howmany’ is not available for package ‘clusterExperiment’
#271 opened Apr 25, 2024 by aarzalluz
1
Seurat Custom Functions
#270 opened Jan 29, 2024 by pshukla63
1
Installation of clusterexperiment fails on 3.14 (BiocManager 1.30.17), R 4.1.3 (2022-03-10) MacOS
#268 opened May 3, 2022 by JesseRop
MinSize in merging step enhancement
#264 opened Mar 11, 2019 by epurdom
calling RSEC() function error: Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘primaryCluster’ for signature ‘"NULL"’
#263 opened Jan 19, 2019 by siyao-liu
5
Fix clusterContrasts so can give whichCluster arg
#258 opened Oct 10, 2018 by epurdom
Function for finding correlation between cluster centroids enhancement
#252 opened Jun 28, 2018 by epurdom
Make function to check if two clusterings are a permutation of each other enhancement
#251 opened Jun 28, 2018 by epurdom
Add violin plot functionality to plotFeatureBoxplot enhancement
#248 opened Jun 6, 2018 by epurdom
plotDendrogram takes a LONG time with large number of cells enhancement
#247 opened May 29, 2018 by epurdom
speed up plotClusters by moving to C++ enhancement
#245 opened May 18, 2018 by epurdom
Store counts as integers enhancement
#238 opened Mar 15, 2018 by epurdom
2
use fastcluster for hierarchical clustering enhancement
#237 opened Mar 15, 2018 by epurdom
5
plotHeatmap not working with NMF development version
#235 opened Jan 26, 2018 by rufletch
16
Sort the values of the cluster names in legend of plotDendrogram enhancement
#230 opened Oct 12, 2017 by epurdom
Using distFun in clusterMany shouldn't use global.env() bug
#229 opened Oct 6, 2017 by epurdom
Use pheatmap instead of aheatmap? enhancement
#224 opened Sep 29, 2017 by epurdom
4
inefficient in findBestK=TRUE enhancement
#223 opened Sep 29, 2017 by epurdom
implement gap statistic enhancement
#222 opened Sep 29, 2017 by epurdom
getClusterManyParams allows to subset enhancement
#218 opened Sep 25, 2017 by epurdom
argument "breaks" in plotHeatmap function for negative values
#215 opened Jul 20, 2017 by fperraudeau
1
dimReduce and scaling
#213 opened Jun 30, 2017 by epurdom
2
only show some factors in legend for plotHeatmap enhancement Issue that depends on another package
#212 opened Jun 24, 2017 by epurdom
plotClusters have a heatmap option for ordering of samples enhancement
#211 opened Jun 24, 2017 by epurdom
ProTip! Updated in the last three days: updated:>2024-12-23.