Paraview for ICON on Santis

recipes/paraview/v1/gh200/compilers.yaml

@@ -0,0 +1,9 @@
+bootstrap:
+  spec: [email protected]
+gcc:
+  specs:
+  - [email protected]
+llvm:
+  requires: [email protected]
+  specs:
+  - [email protected]

recipes/paraview/v1/gh200/config.yaml

@@ -0,0 +1,6 @@
+name: paraview-icon
+store: /user-environment
+spack:
+  commit: releases/v0.21
+  repo: https://github.com/spack/spack.git
+description: Paraview and the tools required to build ICON

recipes/paraview/v1/gh200/environments.yaml

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+nvidia:
+  compiler:
+      - toolchain: gcc
+        spec: gcc
+      - toolchain: llvm
+        spec: nvhpc
+  unify: when_possible
+  mpi:
+      spec: [email protected]%nvhpc
+      gpu: cuda
+  specs:
+  - boost%gcc ~mpi
+  - [email protected]%gcc
+  #- [email protected]%nvhpc +tools +fortran +aec +openmp jp2k=jasper
+  - cmake%gcc
+  - [email protected]%gcc
+  - hdf5%gcc
+  - hwloc%gcc
+  - netcdf-c%gcc
+  - netcdf-cxx4%gcc
+  - netcdf-fortran%nvhpc
+  - numactl%gcc
+  - [email protected]%nvhpc
+  # everything needed for nccl on SS11
+  - aws-ofi-nccl@master%gcc
+  - nccl%gcc
+  - nccl-tests%gcc
+  # The following are required to stop spack from using nvhpc to build
+  # basic dependencies, some of which don't compile with nvc etc.
+  # Explicitly excluded as modules.
+  - autoconf%gcc
+  - automake%gcc
+  - ca-certificates-mozilla%gcc
+  - diffutils%gcc
+  - gnuconfig%gcc
+  - libiconv%gcc
+  - libxcrypt%gcc
+  - libxml2%gcc
+  - m4%gcc
+  - ncurses%gcc
+  - openssl%gcc
+  - perl%gcc
+  - xz%gcc
+  - zlib%gcc
+  - zstd%gcc
+  - c-blosc%gcc
+  - libaec%gcc
+  - jasper%gcc
+  - patchelf%gcc
+  - gmake%gcc
+  - [email protected]%gcc +mpi +tbb +egl ~qt +fortran +python +hdf5 +nvindex +cdi +raytracing
+  - llvm~cuda
+  variants:
+  - cuda_arch=90
+  - +mpi
+  - +cuda
+  packages:
+  - curl
+  - gmake
+  views:
+    default:
+      link: roots

recipes/paraview/v1/gh200/extra/reframe.yaml

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+default:
+  features: [osu-micro-benchmarks, mpi, serial, openmp]
+  cc: mpicc
+  cxx: mpic++
+  ftn: mpifort
+  activation: /user-environment/env/default/activate.sh

recipes/paraview/v1/gh200/modules.yaml

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+modules:
+  # Paths to check when creating modules for all module sets
+  prefix_inspections:
+    bin:
+      - PATH
+    lib:
+      - LD_LIBRARY_PATH
+    lib64:
+      - LD_LIBRARY_PATH
+
+  default:
+    arch_folder: false
+    # Where to install modules
+    roots:
+      tcl: /snap/modules
+    tcl:
+      all:
+        autoload: none
+      hash_length: 0
+      exclude_implicits: true
+      exclude:
+        - '%[email protected]'
+        - 'gcc %[email protected]'
+        - 'autoconf'
+        - 'automake'
+        - 'c-blosc'
+        - 'ca-certificates-mozilla'
+        - 'diffutils'
+        - 'gnuconfig'
+        - 'jasper'
+        - 'libaec'
+        - 'libiconv'
+        - 'libxcrypt'
+        - 'libxml2'
+        - 'patchelf'
+        - 'm4'
+        - 'ncurses'
+        - 'openssl'
+        - 'xz'
+        - 'zlib'
+        - 'zstd'
+      projections:
+        all: '{name}/{version}'

recipes/paraview/v1/gh200/repo/packages/cdi/package.py

@@ -0,0 +1,50 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+# ----------------------------------------------------------------------------
+# If you submit this package back to Spack as a pull request,
+# please first remove this boilerplate and all FIXME comments.
+#
+# This is a template package file for Spack.  We've put "FIXME"
+# next to all the things you'll want to change. Once you've handled
+# them, you can save this file and test your package like this:
+#
+#     spack install cdi
+#
+# You can edit this file again by typing:
+#
+#     spack edit cdi
+#
+# See the Spack documentation for more information on packaging.
+# ----------------------------------------------------------------------------
+
+from spack.package import *
+
+
+class Cdi(AutotoolsPackage):
+    """
+    CDI is a C and Fortran Interface to access Climate and NWP model Data.
+    Supported data formats are GRIB, netCDF, SERVICE, EXTRA and IEG.
+    """
+
+    homepage = "https://code.mpimet.mpg.de/projects/cdi"
+    url = "https://code.mpimet.mpg.de/attachments/download/29309/cdi-2.4.0.tar.gz"
+
+    # FIXME: Add the SPDX identifier of the project's license below.
+    # See https://spdx.org/licenses/ for a list. Upon manually verifying
+    # the license, set checked_by to your Github username.
+    # license("UNKNOWN", checked_by="github_user1")
+
+    version("2.4.0", sha256="91fca015b04c6841b9eab8b49e7726d35e35b9ec4350922072ec6e9d5eb174ef")
+
+    variant("netcdf", default=True, description="This is needed to read/write NetCDF files with CDI")
+
+    depends_on("netcdf-c", when="+netcdf")
+
+    def configure_args(self):
+        args = []
+        if "+netcdf" in self.spec:
+            args.append("--with-netcdf=" + self.spec["netcdf-c"].prefix)
+        return args

recipes/paraview/v1/gh200/repo/packages/egl/package.py

@@ -0,0 +1,92 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+import re
+import sys
+
+from spack.package import *
+
+
+class Egl(BundlePackage):
+    """Placeholder for external EGL(OpenGL) libraries from hardware vendors"""
+
+    homepage = "https://www.khronos.org/egl"
+    maintainers("biddisco")
+
+    version("1.5")
+
+    # This should really be when='platform=linux' but can't because of a
+    # current bug in when and how ArchSpecs are constructed
+    if sys.platform.startswith("linux"):
+        provides("[email protected]")
+
+    # conflict with GLX
+    conflicts("glx")
+
+    # not always available, but sometimes
+    executables = ["^eglinfo$"]
+
+    @classmethod
+    def determine_version(cls, exe):
+        if exe:
+            output = Executable(exe)(output=str, error=str)
+            match = re.search(r"EGL version string: (\S+)", output)
+            return match.group(1) if match else None
+        else:
+            return None
+
+    # Override the fetcher method to throw a useful error message;
+    # fixes GitHub issue (#7061) in which this package threw a
+    # generic, uninformative error during the `fetch` step,
+    @property
+    def fetcher(self):
+        msg = """This package is intended to be a placeholder for
+        system-provided EGL(OpenGL) libraries from hardware vendors.  Please
+        download and install EGL drivers/libraries for your graphics
+        hardware separately, and then set that up as an external package.
+        An example of a working packages.yaml:
+
+        packages:
+          egl:
+            buildable: False
+            externals:
+            - spec: [email protected]
+              prefix: /usr/
+
+        In that case, /usr/ should contain these two folders:
+
+        include/EGL/      (egl headers, including "egl.h")
+        lib               (egl libraries, including "libEGL.so")
+
+        """
+        raise InstallError(msg)
+
+    @fetcher.setter  # Since fetcher is read-write, must override both
+    def fetcher(self):
+        _ = self.fetcher
+
+    @property
+    def headers(self):
+        return self.egl_headers
+
+    @property
+    def libs(self):
+        return self.egl_libs
+
+    @property
+    def egl_headers(self):
+        header_name = "GL/gl"
+        gl_header = find_headers(header_name, root=self.prefix, recursive=True)
+        header_name = "EGL/egl"
+        egl_header = find_headers(header_name, root=self.prefix, recursive=True)
+        return gl_header + egl_header
+
+    @property
+    def egl_libs(self):
+        lib_name = "libGL"
+        gl_lib = find_libraries(lib_name, root=self.prefix, recursive=True)
+        lib_name = "libEGL"
+        egl_lib = find_libraries(lib_name, root=self.prefix, recursive=True)
+        return gl_lib + egl_lib

recipes/paraview/v1/gh200/repo/packages/glew/package.py

@@ -0,0 +1,79 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+import sys
+
+from spack.package import *
+
+
+class Glew(CMakePackage):
+    """The OpenGL Extension Wrangler Library."""
+
+    homepage = "http://glew.sourceforge.net/"
+    url = "https://github.com/nigels-com/glew/releases/download/glew-2.1.0/glew-2.1.0.tgz"
+    root_cmakelists_dir = "build/cmake"
+
+    maintainers("biddisco")
+
+    license("GPL-2.0-or-later")
+
+    version("2.2.0", sha256="d4fc82893cfb00109578d0a1a2337fb8ca335b3ceccf97b97e5cc7f08e4353e1")
+    version("2.1.0", sha256="04de91e7e6763039bc11940095cd9c7f880baba82196a7765f727ac05a993c95")
+    version("2.0.0", sha256="c572c30a4e64689c342ba1624130ac98936d7af90c3103f9ce12b8a0c5736764")
+
+    variant(
+        "gl",
+        default="glx" if sys.platform.startswith("linux") else "other",
+        values=("glx", "osmesa", "egl", "other"),
+        multi=False,
+        description="The OpenGL provider to use",
+    )
+    conflicts("^osmesa", when="gl=glx")
+    conflicts("^osmesa", when="gl=egl")
+    conflicts("^osmesa", when="gl=other")
+    conflicts("^glx", when="gl=osmesa")
+    conflicts("^glx", when="gl=other")
+    conflicts("^glx", when="gl=egl")
+    conflicts("^egl", when="gl=glx")
+    conflicts("^egl", when="gl=osmesa")
+    conflicts("^egl", when="gl=other")
+
+    depends_on("gl")
+    depends_on("osmesa", when="gl=osmesa")
+    depends_on("glx", when="gl=glx")
+    depends_on("libx11", when="gl=glx")
+    depends_on("xproto", when="gl=glx")
+    depends_on("egl", when="gl=egl")
+
+    # glu is already forcibly disabled in the CMakeLists.txt.  This prevents
+    # it from showing up in the .pc file
+    patch("remove-pkgconfig-glu-dep.patch")
+
+    def cmake_args(self):
+        spec = self.spec
+        args = [
+            self.define("BUILD_UTILS", True),
+            self.define("GLEW_REGAL", False),
+            self.define("GLEW_EGL", "gl=egl" in spec),
+            self.define("OPENGL_INCLUDE_DIR", spec["gl"].headers.directories[0]),
+            self.define("OPENGL_gl_LIBRARY", spec["gl"].libs[0]),
+            self.define("OPENGL_opengl_LIBRARY", "IGNORE"),
+            self.define("OPENGL_glx_LIBRARY", "IGNORE"),
+            self.define("OPENGL_glu_LIBRARY", "IGNORE"),
+            self.define("GLEW_OSMESA", "gl=osmesa" in spec),
+        ]
+        if "gl=egl" in spec:
+            args.append(
+                self.define("OPENGL_egl_LIBRARY", [spec["egl"].libs[0], spec["egl"].libs[1]])
+            )
+        else:
+            args.append(self.define("OPENGL_egl_LIBRARY", "IGNORE"))
+
+        return args
+
+    def flag_handler(self, name, flags):
+        if name == "ldflags" and self.spec.satisfies("platform=darwin ^apple-gl"):
+            flags.append("-framework OpenGL")
+        return (flags, None, None)

recipes/paraview/v1/gh200/repo/packages/glew/remove-pkgconfig-glu-dep.patch

@@ -0,0 +1,18 @@
+diff --git a/build/cmake/CMakeLists.txt b/build/cmake/CMakeLists.txt
+index 419c243..339617f 100644
+--- a/build/cmake/CMakeLists.txt
++++ b/build/cmake/CMakeLists.txt
+@@ -215,12 +215,7 @@ set (includedir ${CMAKE_INSTALL_FULL_INCLUDEDIR})
+ set (version ${GLEW_VERSION})
+ set (libname ${GLEW_LIB_NAME})
+ set (cflags)
+-set (requireslib glu)
+-
+-#  Mac OSX has no glu.pc unless optional X11/GLX is installed
+-if (APPLE)
+-  set (requireslib)
+-endif ()
++set (requireslib)
+
+ configure_file (${GLEW_DIR}/glew.pc.in ${CMAKE_CURRENT_BINARY_DIR}/glew.pc @ONLY)
+