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@evolbioinfo

Evolutionary Bioinformatics

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  1. gotree gotree Public

    Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

    Go 124 16

  2. goalign goalign Public

    Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

    Go 74 8

  3. booster booster Public

    C 27 2

  4. pastml pastml Public

    Ancestral character reconstruction and visualisation for rooted phylogenetic trees

    Python 32 6

  5. dockerfiles dockerfiles Public

    Dockerfiles for tools commonly used for phylogenetic analyses

    Dockerfile 9 9

  6. phylodeep phylodeep Public

    PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

    Python 23 6

Repositories

Showing 10 of 30 repositories
  • bdpn Public

    Birth-death epidemiological parameter estimator accounting for partner notification

    evolbioinfo/bdpn’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Nov 29, 2024
  • dockerfiles Public

    Dockerfiles for tools commonly used for phylogenetic analyses

    evolbioinfo/dockerfiles’s past year of commit activity
    Dockerfile 9 9 0 0 Updated Nov 19, 2024
  • phylodeep Public

    PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

    evolbioinfo/phylodeep’s past year of commit activity
    Python 23 6 3 1 Updated Oct 9, 2024
  • treesimulator Public
    evolbioinfo/treesimulator’s past year of commit activity
    Python 2 GPL-3.0 1 0 0 Updated Oct 7, 2024
  • gotree Public

    Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

    evolbioinfo/gotree’s past year of commit activity
    Go 124 GPL-2.0 16 6 0 Updated Sep 26, 2024
  • goalign Public

    Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

    evolbioinfo/goalign’s past year of commit activity
    Go 74 GPL-2.0 8 3 0 Updated Sep 26, 2024
  • bayesian_bootstrap_analyses Public
    evolbioinfo/bayesian_bootstrap_analyses’s past year of commit activity
    Nextflow 2 0 0 0 Updated Sep 20, 2024
  • pastml Public

    Ancestral character reconstruction and visualisation for rooted phylogenetic trees

    evolbioinfo/pastml’s past year of commit activity
    Python 32 GPL-3.0 6 11 0 Updated Sep 18, 2024
  • geo_subsampler Public

    A phylogeny subsampling tool combining geographic proportions and phylogenetic diversity

    evolbioinfo/geo_subsampler’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 6, 2024
  • bdei Public

    Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees

    evolbioinfo/bdei’s past year of commit activity
    Python 3 LGPL-2.1 0 0 0 Updated Aug 7, 2024
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