v0.4.0

• Added use-case workflow

v0.4.0a

• Added functions and command for computing tree neighbors (nni): gotree nni
• Added function and command for testing a clade monophyly: gotree stats monophyletic
• Added command to download a tree from panther (http://pantherdb.org/)
• Refactored TBE computation and support computation
• Added columns to gotree compare edges
• Refactored Newick parser
• Renamed commands classical to fbp and booster to tbe
• Other changes (edge hashes, no auto index initialization, ...)
• Other corrections (itol command, ...)
• Go 1.13.6

v0.3.1

• Added generate startree command
• Added min-mean and max-mean options to brlen setrand
• Corrected output file in compute edgetrees
• Added option -f to compare tips that compares tip names from a tree with tip names from a file
• Corrected error in NCBI taxonomy download when no connection
• Added/Corrected some tests

v0.3.1a

• Corrected build consensus when input tree has format error
• Accept [comment] before tree in newick format
• New function/command to insert identical tips to a tree : gotree repopulate

v0.3.0

• Corrected command brlen cut
• Fixed itol urls
• Corrected prune when no compared tree given
• Corrected NCBI taxonomy download (species names / synonyms)
• Corrected annotate command for rooted trees
• Added post/pre order traversal functions
• Removed error when a support value is given to root node (instead emit a warning)

v0.3.0a

• Modified seed option: only --seed (removed -s to avoid some conflicts...)
• Added brlen cut command
• Refactoring of exit codes and exit points with command line
• Corrected iTol uploader
• Added gotree console mode, when gotree called without options/commands

v0.2.11

• Command gotree rename handles internal nodes

• Command gotree rename can take regular expression

• Mapfile as output is not mandatory anymore in command gotree rename

• Command gotree reroot outgroup emits a warning when the outgroup is not monophyletic

• Added --strict option to command gotree reroot outgroup

• Added compared edge length information in output of command gotree compare edges

• Added generation of bash completion script with command gotree completion bash

• Updated Go to 1.10.3

• Added rounding functions for branch lengths and supports (gotree brlen round and gotree support round)

• Changed output of gotree stats edges command

• Corrected NodeIndex error handling

• Corrected tree.RemoveSingleNodes function

v0.2.11a

Modified generate with tip names

v0.2.10

• Added rotate commands
• Addded option --algo none to acr
• Corrected reroot outgroup with -r option

v0.2.10c

• Addded option --algo none to acr
• Corrected reroot outgroup with -r option