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Update readme file
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fhui28 committed Jun 20, 2024
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Expand Up @@ -25,7 +25,7 @@ The following directories are currently available in this repository:
- A subfolder `plots` containing some of the plots available in the manuscript.
- `application_SOCPR`, which contains template scripts to for reproducing the case study results for the Southern Ocean Continuous Plankton Recorder survey data in the manuscript. Also contained are:
- Two `cpp` scripts implementing independent factor analysis and spatial factor analysis/restricted spatial factor analysis (SFA/RSFA); these scripts are subsequently passed into [TMB](https://cran.r-project.org/web/packages/TMB/index.html) for model fitting;
- A `socpr_reduced.RData` file that contains contains synthetic version of the data;
- A `socpr_reduced.RData` file that contains contains a synthetic version of the data;
- A subfolder `plots` containing some of the plots available in the manuscript.

The simulation results for $N = 1000$ can be produced by straightforwardly modifying the `R` scripts in the `simulation` folder.
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