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robertoostenveld committed Nov 28, 2024
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718 changes: 359 additions & 359 deletions _data/category/faq.yml

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4 changes: 2 additions & 2 deletions _data/tag/anatomical.yml
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- name: What is the plotting convention for anatomical MRIs?
link: /faq/what_is_the_plotting_convention_for_anatomical_mris
link: /faq/anat_plottingconvention

- name: Why does my anatomical MRI show upside-down when plotting it with ft_sourceplot?
link: /faq/why_does_my_anatomical_mri_show_upside-down_when_plotting_it_with_ft_sourceplot
link: /faq/anat_upsidedownplotting

14 changes: 7 additions & 7 deletions _data/tag/anonymize.yml
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- name: Converting the combined MEG/fMRI MOUS dataset for sharing in BIDS
link: /example/bids_mous

- name: How can I anonymize or deidentify an anatomical MRI?
link: /faq/anonymization_anatomical

- name: How can I anonymize or deidentify a BrainVision dataset?
link: /faq/how_can_i_anonymize_a_brainvision_dataset
link: /faq/anonymization_brainvision

- name: How can I anonymize or deidentify a CTF dataset?
link: /faq/how_can_i_anonymize_a_ctf_dataset

- name: How can I anonymize or deidentify an anatomical MRI?
link: /faq/how_can_i_anonymize_an_anatomical_mri
link: /faq/anonymization_ctf

- name: How can I anonymize or deidentify DICOM files?
link: /faq/how_can_i_anonymize_dicom_files
link: /faq/anonymization_dicom

- name: How can I anonymize data processed in FieldTrip?
link: /faq/how_can_i_anonymize_fieldtrip_data
link: /faq/anonymization_fieldtripdata

32 changes: 16 additions & 16 deletions _data/tag/artifact.yml
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- name: Use denoising source separation (DSS) to remove ECG artifacts
link: /example/use_denoising_source_separation_dss_to_remove_ecg_artifacts

- name: Which datasets are used in the documentation and where are they used?
link: /faq/datasets
- name: How can I interpret the different types of padding in FieldTrip?
link: /faq/artifact_padding

- name: How can I consistently represent artifacts in my data?
link: /faq/how_can_i_consistently_represent_artifacts_in_my_data

- name: How can I interpret the different types of padding in FieldTrip?
link: /faq/how_can_i_interpret_the_different_types_of_padding_that_i_find_when_dealing_with_artifacts
link: /faq/artifact_representation

- name: How can I use the databrowser?
link: /faq/how_can_i_use_the_databrowser
link: /faq/databrowser

- name: How does the filter padding in preprocessing work?
link: /faq/how_does_the_filter_padding_in_preprocessing_work
- name: Which datasets are used in the documentation and where are they used?
link: /faq/datasets

- name: Why is there a residual 50Hz line-noise component after applying a DFT filter?
link: /faq/dftfilter_residual

- name: I am getting strange artifacts in figures that use opacity
link: /faq/i_am_getting_strange_artifacts_in_figures_that_use_opacity
link: /faq/opacityrendering

- name: What kind of filters can I apply to my data?
link: /faq/what_kind_of_filters_can_i_apply_to_my_data
link: /faq/preproc_filtertypes

- name: How does the filter padding in preprocessing work?
link: /faq/preproc_padding

- name: Why does my TFR look strange (part I, demeaning)?
link: /faq/why_does_my_tfr_look_strange
link: /faq/tfr_strangedemean

- name: Why does my TFR look strange (part II, detrending)?
link: /faq/why_does_my_tfr_look_strange_part_ii

- name: Why is there a residual 50Hz line-noise component after applying a DFT filter?
link: /faq/why_is_there_a_residual_50hz_line-noise_component_after_applying_a_dft_filter
link: /faq/tfr_strangedetrend

- name: Introduction on dealing with artifacts
link: /tutorial/artifacts
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3 changes: 0 additions & 3 deletions _data/tag/atlas.yml
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- name: How can I map source locations onto an anatomical label in an atlas?
link: /faq/how_can_i_map_source_locations_between_two_different_representations

- name: Template anatomical atlases and parcellation schemes
link: /template/atlas

2 changes: 1 addition & 1 deletion _data/tag/brainvision.yml
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link: /development/realtime/rda

- name: How can I anonymize or deidentify a BrainVision dataset?
link: /faq/how_can_i_anonymize_a_brainvision_dataset
link: /faq/anonymization_brainvision

- name: Getting started with BrainVision Analyzer and Easycap
link: /getting_started/brainvision
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14 changes: 7 additions & 7 deletions _data/tag/cluster.yml
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- name: Use simulated ERPs to explore cluster statistics
link: /example/use_simulated_erps_to_explore_cluster_statistics

- name: How can I define neighbouring sensors?
link: /faq/how_can_i_define_neighbouring_sensors
- name: Why should I use the cfg.correcttail option when using statistics_montecarlo?
link: /faq/clusterstats_correcttail

- name: How does ft_prepare_neighbours work?
link: /faq/how_does_ft_prepare_neighbours_work
link: /faq/neighbours_prepare

- name: What is the idea behind statistical inference at the second-level?
link: /faq/what_is_the_idea_behind_statistical_inference_at_the_second-level
- name: How can I define neighbouring sensors?
link: /faq/sensors_neighbours

- name: Why should I use the cfg.correcttail option when using statistics_montecarlo?
link: /faq/why_should_i_use_the_cfg.correcttail_option_when_using_statistics_montecarlo
- name: What is the idea behind statistical inference at the second-level?
link: /faq/statistics_secondlevel

10 changes: 5 additions & 5 deletions _data/tag/coherence.yml
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- name: Correlation analysis of fMRI data
link: /example/correlation_analysis_in_fmri_data

- name: How to interpret the sign of the phase slope index?
link: /faq/how_to_interpret_the_sign_of_the_phase_slope_index
- name: What is the difference between coherence and coherency?
link: /faq/coherence_coherency

- name: In what way can frequency domain data be represented in FieldTrip?
link: /faq/in_what_way_can_frequency_domain_data_be_represented_in_fieldtrip
link: /faq/datatype_freq

- name: How can I compute inter-trial coherence?
link: /faq/itc

- name: What is the difference between coherence and coherency?
link: /faq/what_is_the_difference_between_coherence_and_coherency
- name: How to interpret the sign of the phase slope index?
link: /faq/phaseslopeindex

- name: References to implemented methods
link: /references_to_implemented_methods
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2 changes: 1 addition & 1 deletion _data/tag/connectivity.yml
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link: /example/connectivity_conditional_granger

- name: In what way can frequency domain data be represented in FieldTrip?
link: /faq/in_what_way_can_frequency_domain_data_be_represented_in_fieldtrip
link: /faq/datatype_freq

- name: Analysis of corticomuscular coherence
link: /tutorial/coherence
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8 changes: 4 additions & 4 deletions _data/tag/continuous.yml
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- name: Why should I set continuous to yes for CTF data?
link: /faq/continuous

- name: How can I do time-frequency analysis on continuous data?
link: /faq/how_can_i_do_time-frequency_analysis_on_continuous_data

- name: How can I process continuous data without triggers?
link: /faq/how_can_i_process_continuous_data_without_triggers
link: /faq/preproc_continuous

- name: How can I do time-frequency analysis on continuous data?
link: /faq/tfr_continuous

- name: Preprocessing - Reading continuous EEG and MEG data
link: /tutorial/continuous
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30 changes: 15 additions & 15 deletions _data/tag/coordinate.yml
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- name: What is the difference between the ACPC, MNI, SPM and TAL coordinate systems?
link: /faq/acpc

- name: How are the different head and MRI coordinate systems defined?
link: /faq/coordsys
- name: How to coregister an anatomical MRI with the gradiometer or electrode positions?
link: /faq/anat_coreg

- name: How do homogenous coordinate transformation matrices work?
link: /faq/homogenous
- name: How can I convert an anatomical MRI from DICOM into CTF format?
link: /faq/anat_dicom2ctf

- name: How are the Left and Right Pre-Auricular (LPA and RPA) points defined?
link: /faq/how_are_the_lpa_and_rpa_points_defined

- name: How can I convert an anatomical MRI from DICOM into CTF format?
link: /faq/how_can_i_convert_an_anatomical_mri_from_dicom_into_ctf_format
link: /faq/anat_landmarks

- name: How to change the MRI orientation, the voxel size or the field-of-view?
link: /faq/how_change_mri_orientation_size_fov
link: /faq/anat_reslice

- name: How should I report the positions of the fiducial points on the head?
link: /faq/how_should_i_report_the_positions_of_the_fiducial_points_on_the_head
- name: My MRI is upside down, is this a problem?
link: /faq/anat_upsidedown

- name: How to coregister an anatomical MRI with the gradiometer or electrode positions?
link: /faq/how_to_coregister_an_anatomical_mri_with_the_gradiometer_or_electrode_positions
- name: How are the different head and MRI coordinate systems defined?
link: /faq/coordsys

- name: My MRI is upside down, is this a problem?
link: /faq/my_mri_is_upside_down_is_this_a_problem
- name: How should I report the positions of the fiducial points on the head?
link: /faq/fiducials_definition

- name: How do homogenous coordinate transformation matrices work?
link: /faq/homogenous

- name: Getting started with Yokogawa data
link: /getting_started/yokogawa
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12 changes: 6 additions & 6 deletions _data/tag/corrupt.yml
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- name: How can I deal with a discontinuous Neuralynx LFP recording?
link: /faq/discontinuous_neuralynx

- name: How can I fix a corrupt CTF meg4 file?
link: /faq/how_can_i_fix_a_corrupt_ctf_meg4_data_file
link: /faq/ctf_fixmeg4

- name: How can I fix a corrupt CTF res4 header file?
link: /faq/how_can_i_fix_a_corrupt_ctf_res4_header_file
link: /faq/ctf_fixres4

- name: How can I read corrupted (unsaved) CTF data?
link: /faq/how_can_i_read_corrupted_unsaved_ctf_data
link: /faq/ctf_readcorrupted

- name: How can I deal with a discontinuous Neuralynx LFP recording?
link: /faq/discontinuous_neuralynx

8 changes: 4 additions & 4 deletions _data/tag/crash.yml
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- name: I used ICA on my MEG data from before 2012 and now FieldTrip crashes, why is that?
link: /faq/i_used_ica_on_my_meg_data_from_before_2012_and_now_fieldtrip_crashes_why_is_that

- name: The databrowser crashes and destroys the whole MATLAB session, how can I resolve this?
link: /faq/the_databrowser_crashes_and_destroys_the_whole_matlab_session_how_can_i_resolve_this
link: /faq/databrowser_crash

- name: I used ICA on my MEG data from before 2012 and now FieldTrip crashes, why is that?
link: /faq/ica_crash

32 changes: 16 additions & 16 deletions _data/tag/ct.yml
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- name: Use denoising source separation (DSS) to remove ECG artifacts
link: /example/use_denoising_source_separation_dss_to_remove_ecg_artifacts

- name: Which datasets are used in the documentation and where are they used?
link: /faq/datasets
- name: How can I interpret the different types of padding in FieldTrip?
link: /faq/artifact_padding

- name: How can I consistently represent artifacts in my data?
link: /faq/how_can_i_consistently_represent_artifacts_in_my_data

- name: How can I interpret the different types of padding in FieldTrip?
link: /faq/how_can_i_interpret_the_different_types_of_padding_that_i_find_when_dealing_with_artifacts
link: /faq/artifact_representation

- name: How can I use the databrowser?
link: /faq/how_can_i_use_the_databrowser
link: /faq/databrowser

- name: How does the filter padding in preprocessing work?
link: /faq/how_does_the_filter_padding_in_preprocessing_work
- name: Which datasets are used in the documentation and where are they used?
link: /faq/datasets

- name: Why is there a residual 50Hz line-noise component after applying a DFT filter?
link: /faq/dftfilter_residual

- name: I am getting strange artifacts in figures that use opacity
link: /faq/i_am_getting_strange_artifacts_in_figures_that_use_opacity
link: /faq/opacityrendering

- name: What kind of filters can I apply to my data?
link: /faq/what_kind_of_filters_can_i_apply_to_my_data
link: /faq/preproc_filtertypes

- name: How does the filter padding in preprocessing work?
link: /faq/preproc_padding

- name: Why does my TFR look strange (part I, demeaning)?
link: /faq/why_does_my_tfr_look_strange
link: /faq/tfr_strangedemean

- name: Why does my TFR look strange (part II, detrending)?
link: /faq/why_does_my_tfr_look_strange_part_ii

- name: Why is there a residual 50Hz line-noise component after applying a DFT filter?
link: /faq/why_is_there_a_residual_50hz_line-noise_component_after_applying_a_dft_filter
link: /faq/tfr_strangedetrend

- name: Introduction on dealing with artifacts
link: /tutorial/artifacts
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28 changes: 14 additions & 14 deletions _data/tag/ctf.yml
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- name: Can I create an artificial CTF dataset using MATLAB?
link: /example/writing_simulated_data_to_a_ctf_dataset

- name: Why should I set continuous to yes for CTF data?
link: /faq/continuous
- name: How can I convert an anatomical MRI from DICOM into CTF format?
link: /faq/anat_dicom2ctf

- name: How are the Left and Right Pre-Auricular (LPA and RPA) points defined?
link: /faq/how_are_the_lpa_and_rpa_points_defined
link: /faq/anat_landmarks

- name: How can I anonymize or deidentify a CTF dataset?
link: /faq/how_can_i_anonymize_a_ctf_dataset
link: /faq/anonymization_ctf

- name: Why should I set continuous to yes for CTF data?
link: /faq/continuous

- name: How can I change the head localization in a CTF dataset?
link: /faq/how_can_i_change_the_head_localization_in_a_ctf_dataset
link: /faq/ctf_changeheadloc

- name: How can I convert an anatomical MRI from DICOM into CTF format?
link: /faq/how_can_i_convert_an_anatomical_mri_from_dicom_into_ctf_format
- name: I am having problems reading the CTF .hc headcoordinates file
link: /faq/ctf_fixhc

- name: How can I fix a corrupt CTF meg4 file?
link: /faq/how_can_i_fix_a_corrupt_ctf_meg4_data_file
link: /faq/ctf_fixmeg4

- name: How can I fix a corrupt CTF res4 header file?
link: /faq/how_can_i_fix_a_corrupt_ctf_res4_header_file
link: /faq/ctf_fixres4

- name: How can I read corrupted (unsaved) CTF data?
link: /faq/how_can_i_read_corrupted_unsaved_ctf_data
link: /faq/ctf_readcorrupted

- name: How does the CTF higher-order gradiometer work?
link: /faq/how_does_the_ctf_higher-order_gradiometer_work

- name: I am having problems reading the CTF .hc headcoordinates file
link: /faq/i_am_having_problems_reading_the_ctf_.hc_headcoordinates_file
link: /faq/ctf_syntheticgradient

- name: Getting started with CTF data
link: /getting_started/ctf
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8 changes: 4 additions & 4 deletions _data/tag/cvs.yml
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- name: Accessing the FieldTrip source code through SVN
link: /development/svn

- name: How can I keep track of changes to the code?
link: /faq/how_can_i_keep_track_of_the_changes_to_the_code

- name: Why was FieldTrip maintained in SVN and not in Git?
link: /faq/why_is_fieldtrip_maintained_in_svn_and_not_in_git
link: /faq/svnversusgit

- name: How can I keep track of changes to the code?
link: /faq/trackchanges

8 changes: 4 additions & 4 deletions _data/tag/data.yml
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- name: I used ICA on my MEG data from before 2012 and now FieldTrip crashes, why is that?
link: /faq/i_used_ica_on_my_meg_data_from_before_2012_and_now_fieldtrip_crashes_why_is_that

- name: The databrowser crashes and destroys the whole MATLAB session, how can I resolve this?
link: /faq/the_databrowser_crashes_and_destroys_the_whole_matlab_session_how_can_i_resolve_this
link: /faq/databrowser_crash

- name: I used ICA on my MEG data from before 2012 and now FieldTrip crashes, why is that?
link: /faq/ica_crash

4 changes: 2 additions & 2 deletions _data/tag/databrowser.yml
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- name: How can I use the databrowser?
link: /faq/how_can_i_use_the_databrowser
link: /faq/databrowser

- name: The databrowser crashes and destroys the whole MATLAB session, how can I resolve this?
link: /faq/the_databrowser_crashes_and_destroys_the_whole_matlab_session_how_can_i_resolve_this
link: /faq/databrowser_crash

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