Update v0.8

.cspell_dict.txt

@@ -3,6 +3,8 @@ allreduce
 argsort
 astype
 atol
+basix
+cellname
 cofac
 dirichletbc
 dofs
@@ -11,6 +13,7 @@ fenics
 fenicsx
 fenicsx_pulse
 finsberg
+functionspace
 gradu
 Holzapfel
 holzapfelogden
@@ -36,3 +39,8 @@ subplus
 varepsilon
 Venant
 XDMF
+PYVISTA
+TRAME
+libgl
+libxrender
+xvfb

.github/workflows/build_docs.yml

@@ -2,10 +2,10 @@
 name: Deploy static content to Pages
 
 on:
-  # Runs on pushes targeting the default branch
+  pull_request:
   push:
-    branches:
-    - "**"
+    branches: [main]
+
 
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
@@ -29,10 +29,17 @@ jobs:
     env:
       DEB_PYTHON_INSTALL_LAYOUT: deb_system
       PUBLISH_DIR: ./_build/html
+      PYVISTA_TRAME_SERVER_PROXY_PREFIX: "/proxy/"
+      PYVISTA_TRAME_SERVER_PROXY_ENABLED: "True"
+      PYVISTA_OFF_SCREEN: false
+      PYVISTA_JUPYTER_BACKEND: "html"
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
+
+      - name: Install dependencies for pyvista
+        run: apt-get update && apt-get install -y libgl1-mesa-glx libxrender1 xvfb
 
       - name: Install dependencies
         run: python3 -m pip install ".[docs]"
@@ -41,7 +48,7 @@ jobs:
         run: jupyter book build -W .
 
       - name: Upload artifact
-        uses: actions/upload-pages-artifact@v1
+        uses: actions/upload-pages-artifact@v3
         with:
           path: ${{ env.PUBLISH_DIR }}
 
@@ -57,12 +64,12 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Setup Pages
-        uses: actions/configure-pages@v2
+        uses: actions/configure-pages@v4
 
 
       - name: Deploy to GitHub Pages
         id: deployment
-        uses: actions/deploy-pages@v1
+        uses: actions/deploy-pages@v4

.github/workflows/pre-commit.yml

@@ -1,14 +1,18 @@
 name: Pre-commit
 
-on: [push]
+on:
+  pull_request:
+  push:
+    branches: [main]
+
 
 
 jobs:
   check-code:
     runs-on: ubuntu-22.04
     steps:
       # This action sets the current path to the root of your github repo
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: Install pre-commit
         run: python3 -m pip install pre-commit

.github/workflows/pypi.yml

@@ -1,17 +1,21 @@
 name: Release
 
-on: [push]
+on:
+  pull_request:
+  push:
+    branches: [main]
+
 
 jobs:
   dist:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v4
 
     - name: Build SDist and wheel
       run: pipx run build
 
-    - uses: actions/upload-artifact@v3
+    - uses: actions/upload-artifact@v4
       with:
         path: dist/*
 
@@ -27,7 +31,7 @@ jobs:
       id-token: write
 
     steps:
-    - uses: actions/download-artifact@v3
+    - uses: actions/download-artifact@v4
       with:
         name: artifact
         path: dist

.github/workflows/test_package_coverage.yml

@@ -12,7 +12,7 @@ jobs:
 
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: Install package
         run: python3 -m pip install .[test]
@@ -28,14 +28,14 @@ jobs:
           echo "total=$TOTAL" >> $GITHUB_ENV
 
       - name: Upload HTML report.
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: html-report
           path: htmlcov
 
       - name: Create coverage Badge
         if: github.ref == 'refs/heads/main'
-        uses: schneegans/dynamic-badges-action@v1.6.0
+        uses: schneegans/dynamic-badges-action@v1.7.0
         with:
           auth: ${{ secrets.GIST_SECRET }}
           gistID: a7290de789564f03eb6b1ee122fce423

_config.yml

@@ -30,6 +30,12 @@ parse:
 
 sphinx:
   config:
+    html_last_updated_fmt: "%b %d, %Y"
+    nb_custom_formats:  # https://jupyterbook.org/en/stable/file-types/jupytext.html#file-types-custom
+        .py:
+            - jupytext.reads
+            - fmt: py
+
     suppress_warnings: ["mystnb.unknown_mime_type"]
     html_js_files:
       - https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js
@@ -38,4 +44,4 @@ sphinx:
   - 'sphinx.ext.napoleon'
   - 'sphinx.ext.viewcode'
 
-exclude_patterns: [".pytest_cache/*", ".github/*"]
+exclude_patterns: [".pytest_cache/*", ".github/*", ".tox/*"]