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Merge pull request #1055 from perazz/hdf5_metapackage
Metapackages: `pkg_config` backend support; HDF5
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -67,6 +67,7 @@ jobs: | |
| wget | ||
| unzip | ||
| curl | ||
| hdf5 | ||
| - name: (Windows) Setup VS Build environment | ||
| if: contains(matrix.os,'windows') && contains(matrix.mpi,'intel') | ||
|
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@@ -93,12 +94,12 @@ jobs: | |
| - name: (Ubuntu) Install OpenMPI | ||
| if: contains(matrix.os,'ubuntu') && contains(matrix.mpi,'openmpi') | ||
| run: | | ||
| sudo apt install -y -q openmpi-bin libopenmpi-dev | ||
| sudo apt install -y -q openmpi-bin libopenmpi-dev hwloc fabric libhdf5-dev libhdf5-fortran-102 | ||
| - name: (Ubuntu) Install MPICH | ||
| if: contains(matrix.os,'ubuntu') && contains(matrix.mpi,'mpich') | ||
| run: | | ||
| sudo apt install -y -q mpich | ||
| sudo apt install -y -q mpich hwloc fabric libhdf5-dev libhdf5-fortran-102 | ||
| - name: (Ubuntu) Retrieve Intel toolchain | ||
| if: contains(matrix.os,'ubuntu') && contains(matrix.mpi,'intel') | ||
|
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@@ -110,14 +111,27 @@ jobs: | |
| - name: (Ubuntu) Install Intel oneAPI | ||
| if: contains(matrix.os,'ubuntu') && contains(matrix.mpi,'intel') | ||
| timeout-minutes: 15 | ||
| run: sudo apt-get install intel-oneapi-compiler-dpcpp-cpp-2023.1.0 intel-oneapi-compiler-fortran-2023.1.0 intel-oneapi-mpi-devel ninja-build | ||
| uses: fortran-lang/[email protected] | ||
| id: setup-fortran | ||
| with: | ||
| compiler: intel | ||
| version: 2024.1.0 | ||
|
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||
| - name: (Ubuntu) Setup Intel oneAPI environment | ||
| - name: (Ubuntu) finalize oneAPI environment | ||
| if: contains(matrix.os,'ubuntu') && contains(matrix.mpi,'intel') | ||
| run: | | ||
| source /opt/intel/oneapi/setvars.sh | ||
| printenv >> $GITHUB_ENV | ||
| # Install MPI | ||
| sudo apt-get install -y -q intel-oneapi-mpi-devel ninja-build cmake | ||
| source /opt/intel/oneapi/setvars.sh --force | ||
| printenv >> $GITHUB_ENV | ||
| # To run HDF5 with oneAPI, we need to build it from source. Use CMake to generate pkg-config info | ||
| curl -O -L https://github.com/HDFGroup/hdf5/archive/refs/tags/snapshot-1.14.tar.gz | ||
| tar zxf snapshot-1.14.tar.gz | ||
| cd hdf5-snapshot-1.14 | ||
| cmake -B build -DCMAKE_Fortran_COMPILER=ifx -DCMAKE_C_COMPILER=icx -DCMAKE_CXX_COMPILER=icpx -DHDF5_BUILD_FORTRAN=ON -DCMAKE_INSTALL_PREFIX=/usr | ||
| cd build | ||
| make -j | ||
| sudo make install | ||
| - name: (Windows) Put MSYS2_MinGW64 on PATH | ||
| if: contains(matrix.os,'windows') && (!contains(matrix.mpi,'intel')) | ||
|
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@@ -197,6 +211,11 @@ jobs: | |
| run: | | ||
| brew install openmpi #--cc=gcc-${{ env.GCC_V }} openmpi | ||
| - name: (macOS) Install homebrew HDF5 | ||
| if: contains(matrix.os,'macos') | ||
| run: | | ||
| brew install hdf5 | ||
| # Phase 1: Bootstrap fpm with existing version | ||
| - name: Install fpm | ||
| uses: fortran-lang/setup-fpm@v5 | ||
|
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@@ -209,8 +228,8 @@ jobs: | |
| mv $(which fpm) fpm-bootstrap${{ matrix.exe }} | ||
| echo "BOOTSTRAP=$PWD/fpm-bootstrap" >> $GITHUB_ENV | ||
| - name: (macOS) Use gcc/g++ instead of Clang for C/C++ | ||
| if: contains(matrix.os,'macOS') | ||
| - name: (macOS/Ubuntu) Use gcc/g++ instead of Clang for C/C++ / ifx to build fpm | ||
| if: contains(matrix.os,'macOS') || contains(matrix.os,'ubuntu') | ||
| shell: bash | ||
| run: | | ||
| echo "FPM_FC=gfortran-${{ env.GCC_V }}" >> $GITHUB_ENV | ||
|
|
||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,15 @@ | ||
| program metapackage_hdf5 | ||
| use hdf5 | ||
| implicit none | ||
|
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| integer :: error | ||
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| call h5open_f(error) | ||
| if (error/=0) stop -1 | ||
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| call h5close_f(error) | ||
| if (error/=0) stop -2 | ||
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| stop 0 | ||
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||
| end program metapackage_hdf5 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,2 @@ | ||
| name = "metapackage_hdf5" | ||
| dependencies.hdf5="*" |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,38 @@ | ||
| #include <stdlib.h> | ||
| #include <stdio.h> | ||
|
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||
| /// @brief Set environment variable using the C standard library | ||
| /// @param envname: points to a string containing the name of an environment variable to be added or altered. | ||
| /// @param envval: points to the value the environment variable is set to | ||
| /// @param overwrite: flag to determine whether an old value should be overwritten | ||
| /// @return success flag, 0 on successful execution | ||
| int c_setenv(const char *envname, const char *envval, int overwrite) { | ||
| #ifndef _WIN32 | ||
| return setenv(envname, envval, overwrite); | ||
| #else | ||
| int errcode = 0; | ||
| if(!overwrite) { | ||
| size_t envsize = 0; | ||
| errcode = getenv_s(&envsize, NULL, 0, envname); | ||
| if (errcode || envsize) return errcode; | ||
| } | ||
| return _putenv_s(envname, envval); | ||
| #endif | ||
| } | ||
|
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| /// @brief Delete environment variable using the C standard library | ||
| /// @param envname: points to a string containing the name of an environment variable. | ||
| /// @return success flag, 0 on successful execution | ||
| int c_unsetenv(const char *envname) { | ||
| #ifndef _WIN32 | ||
| return unsetenv(envname); | ||
| #else | ||
| char* str = malloc(64*sizeof(char)); | ||
| *str = '\0'; | ||
| int errcode = _putenv_s(envname,str); | ||
| // Windows returns a non-0 code when setting empty variable | ||
| if (errcode==-1) errcode=0; | ||
| free(str); | ||
| return errcode; | ||
| #endif | ||
| } |
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