remove old installation procedure from paper #8
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| # Workflow is triggered on label and check installation on various operating systems | |
| # This action is adapted from https://github.com/t4d-gmbh/stubbed_versioning | |
| name: Ubuntu Install | |
| on: | |
| push: | |
| branches: | |
| - "main" | |
| env: | |
| BRANCH: ${{ github.head_ref || github.ref_name }} | |
| permissions: | |
| packages: read | |
| contents: write | |
| pull-requests: write | |
| repository-projects: write | |
| jobs: | |
| setup-and-install: | |
| runs-on: ubuntu-latest | |
| name: ubuntu-latest R release | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - name: Update and upgrade | |
| run: | | |
| sudo apt-get update && sudo apt-get upgrade | |
| - name: install R | |
| run: | | |
| sudo apt-get -y install r-base | |
| - name: fixing folder perms for local lib | |
| run: | | |
| sudo chown root:adm -R /usr/lib/R | |
| sudo chmod g+w -R /usr/lib/R | |
| sudo chown root:adm -R /usr/local/lib/R | |
| sudo chmod g+w -R /usr/local/lib/R | |
| - name: install config and build dependencies | |
| run: | | |
| sudo apt-get -y install libcurl4-openssl-dev # needed for pak | |
| - name: install pak | |
| run: | | |
| install.packages('pak', repos=c(CRAN="https://cran.r-project.org")) | |
| shell: Rscript {0} | |
| # - name: install from CRAN with pak | |
| # run: | | |
| # pak::pkg_install('abn', dependencies=TRUE) | |
| # library('abn') | |
| # shell: Rscript {0} | |
| - name: pak install from GitHub | |
| run: | | |
| pak::repo_add(INLA = "https://inla.r-inla-download.org/R/stable/") | |
| pak::pkg_install("furrer-lab/abn@${{ env.BRANCH }}", dependencies=TRUE) | |
| library('abn') | |
| shell: Rscript {0} | |
| - name: fetch the repository from GitHub | |
| uses: actions/checkout@v4 | |
| - name: deactivate the renv | |
| run: | | |
| renv::deactivate() | |
| shell: Rscript {0} | |
| - name: install from source | |
| run: | | |
| pak::local_install(dependencies=TRUE) | |
| shell: Rscript {0} |