update cat-vrs and add labels to test

ga4gh · Nov 25, 2024 · 0228579 · 0228579
1 parent 779b64e
commit 0228579
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/submodules/cat-vrs b/submodules/cat-vrs
diff --git a/tests/fixtures/Var-Onco-Func-Impact-Evidence-Line-02.yaml b/tests/fixtures/Var-Onco-Func-Impact-Evidence-Line-02.yaml
@@ -3,6 +3,7 @@ targetProposition:
   type: VariantOncogenicityProposition
   subjectVariant:
     type: CategoricalVariant
+    label: EGFR R11T
     constraints:
       - type: DefiningAlleleConstraint
         allele:
@@ -26,11 +27,12 @@ targetProposition:
           - primaryCode: translates_from
   predicate: isOncogenicFor
   objectTumorType:
-    conceptType: TumorType
-    label: Unspecified
+    primaryCode: ncit:C4872
+    label: Breast Carcinoma
   geneContextQualifier:
     conceptType: Gene
     label: EGFR
+    primaryCode: ncbigene:1956
 directionOfEvidenceProvided: supports
 strengthOfEvidenceProvided: 
   primaryCode: supporting