GA4GH ASHG hackathon changes #2
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name: CI | |
on: | |
push: | |
pull_request: | |
jobs: | |
ci: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
submodules: recursive | |
- name: Set up Python 3.12 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.12' | |
architecture: 'x64' | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip setuptools | |
pip install -r .requirements.txt --pre | |
- name: Build jsonschema | |
run: | | |
cd schema | |
make all | |
- name: Validate jsonschemas are valid | |
run: | | |
for schema_f in schema/vrs/json/*; do | |
python -c "import json, jsonschema; jsonschema.Draft202012Validator.check_schema(json.load(open('$schema_f')))" | |
done | |
- name: Build HTML | |
run: | | |
# -W is too noisy as it treats all warnings as errors and we have a lot of warnings | |
# SPHINXOPTS='-W --keep-going' make html | |
cd docs | |
make html >html.log 2>&1 | |
# succeed if not found, fail if found | |
! grep -E "ERROR|CRITICAL" html.log |