Skip to content

GA4GH ASHG hackathon changes #2

GA4GH ASHG hackathon changes

GA4GH ASHG hackathon changes #2

Workflow file for this run

name: CI
on:
push:
pull_request:
jobs:
ci:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
submodules: recursive
- name: Set up Python 3.12
uses: actions/setup-python@v5
with:
python-version: '3.12'
architecture: 'x64'
- name: Install dependencies
run: |
python -m pip install --upgrade pip setuptools
pip install -r .requirements.txt --pre
- name: Build jsonschema
run: |
cd schema
make all
- name: Validate jsonschemas are valid
run: |
for schema_f in schema/vrs/json/*; do
python -c "import json, jsonschema; jsonschema.Draft202012Validator.check_schema(json.load(open('$schema_f')))"
done
- name: Build HTML
run: |
# -W is too noisy as it treats all warnings as errors and we have a lot of warnings
# SPHINXOPTS='-W --keep-going' make html
cd docs
make html >html.log 2>&1
# succeed if not found, fail if found
! grep -E "ERROR|CRITICAL" html.log