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Fixes for mypy 1.12.0 #284

Fixes for mypy 1.12.0

Fixes for mypy 1.12.0 #284

Workflow file for this run

name: Selenium tests
on:
push:
paths-ignore:
- 'doc/**'
pull_request:
paths-ignore:
- 'doc/**'
schedule:
# Run at midnight UTC every Tuesday
- cron: '0 0 * * 2'
env:
GALAXY_CONFIG_GALAXY_URL_PREFIX: '/galaxypf'
GALAXY_TEST_DBURI: 'postgresql://postgres:postgres@localhost:5432/galaxy?client_encoding=utf8'
GALAXY_TEST_RAISE_EXCEPTION_ON_HISTORYLESS_HDA: '1'
GALAXY_TEST_SELENIUM_RETRIES: 1
GALAXY_TEST_SKIP_FLAKEY_TESTS_ON_ERROR: 1
YARN_INSTALL_OPTS: --frozen-lockfile
GALAXY_CONFIG_SQLALCHEMY_WARN_20: '1'
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
setup-selenium:
uses: ./.github/workflows/setup_selenium.yaml
build-client:
uses: ./.github/workflows/build_client.yaml
test:
name: Test
needs: [setup-selenium, build-client]
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ['3.8']
chunk: [0, 1, 2]
services:
postgres:
image: postgres:13
env:
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
ports:
- 5432:5432
steps:
- if: github.event_name == 'schedule'
run: |
echo "GALAXY_CONFIG_OVERRIDE_METADATA_STRATEGY=extended" >> $GITHUB_ENV
echo "GALAXY_CONFIG_OVERRIDE_OUTPUTS_TO_WORKING_DIRECTORY=true" >> $GITHUB_ENV
- uses: actions/checkout@v4
with:
path: 'galaxy root'
- uses: actions/setup-node@v4
with:
node-version: '18.12.1'
cache: 'yarn'
cache-dependency-path: 'galaxy root/client/yarn.lock'
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
cache: 'pip'
cache-dependency-path: 'galaxy root/requirements.txt'
- name: Get full Python version
id: full-python-version
shell: bash
run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
- name: Cache galaxy venv
uses: actions/cache@v4
with:
path: 'galaxy root/.venv'
key: gxy-venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('galaxy root/requirements.txt') }}-selenium
- name: Restore client cache
uses: actions/cache@v4
with:
key: galaxy-static-${{ needs.build-client.outputs.commit-id }}
path: 'galaxy root/static'
- name: Run tests
run: ./run_tests.sh --coverage -selenium lib/galaxy_test/selenium -- --num-shards=3 --shard-id=${{ matrix.chunk }}
working-directory: 'galaxy root'
- uses: codecov/codecov-action@v3
with:
flags: selenium
working-directory: 'galaxy root'
- uses: actions/upload-artifact@v4
if: failure()
with:
name: Selenium test results (${{ matrix.python-version }}, ${{ matrix.chunk }})
path: 'galaxy root/run_selenium_tests.html'
- uses: actions/upload-artifact@v4
if: failure()
with:
name: Selenium debug info (${{ matrix.python-version }}, ${{ matrix.chunk }})
path: 'galaxy root/database/test_errors'