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Sync python-irodsclient version with dev-requirements.txt #212

Sync python-irodsclient version with dev-requirements.txt

Sync python-irodsclient version with dev-requirements.txt #212

Workflow file for this run

name: API tests
on:
push:
paths-ignore:
- 'client/**'
- 'doc/**'
- 'lib/galaxy_test/selenium/**'
pull_request:
paths-ignore:
- 'client/**'
- 'doc/**'
- 'lib/galaxy_test/selenium/**'
schedule:
# Run at midnight UTC every Tuesday
- cron: '0 0 * * 2'
env:
GALAXY_DEPENDENCIES_INSTALL_WEASYPRINT: '1'
GALAXY_TEST_DBURI: 'postgresql://postgres:postgres@localhost:5432/galaxy?client_encoding=utf8'
GALAXY_TEST_RAISE_EXCEPTION_ON_HISTORYLESS_HDA: '1'
GALAXY_CONFIG_SQLALCHEMY_WARN_20: '1'
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
test:
name: Test
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ['3.8']
chunk: [0, 1]
services:
postgres:
image: postgres:13
env:
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
ports:
- 5432:5432
steps:
- if: github.event_name == 'schedule'
run: |
echo "GALAXY_CONFIG_OVERRIDE_METADATA_STRATEGY=extended" >> $GITHUB_ENV
echo "GALAXY_CONFIG_OVERRIDE_OUTPUTS_TO_WORKING_DIRECTORY=true" >> $GITHUB_ENV
- uses: actions/checkout@v3
with:
path: 'galaxy root'
- uses: actions/setup-node@v3
with:
node-version: '18.12.1'
cache: 'yarn'
cache-dependency-path: 'galaxy root/client/yarn.lock'
- uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Get full Python version
id: full-python-version
shell: bash
run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT
- name: Cache pip dir
uses: actions/cache@v3
with:
path: ~/.cache/pip
key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }}
- name: Cache galaxy venv
uses: actions/cache@v3
with:
path: 'galaxy root/.venv'
key: gxy-venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('galaxy root/requirements.txt') }}-api
- name: Run tests
run: ./run_tests.sh --coverage --skip_flakey_fails -api lib/galaxy_test/api -- --num-shards=2 --shard-id=${{ matrix.chunk }}
working-directory: 'galaxy root'
- uses: codecov/codecov-action@v3
with:
flags: api
working-directory: 'galaxy root'
- uses: actions/upload-artifact@v3
if: failure()
with:
name: API test results (${{ matrix.python-version }}, ${{ matrix.chunk }})
path: 'galaxy root/run_api_tests.html'