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Update Python dependencies
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@galaxybot
galaxybot authored Mar 2, 2024
1 parent 06eada1 commit 7b91fbd
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Showing 4 changed files with 34 additions and 34 deletions.
28 changes: 14 additions & 14 deletions lib/galaxy/dependencies/dev-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -11,8 +11,8 @@ babel==2.14.0 ; python_version >= "3.8" and python_version < "3.13"
backports-zoneinfo==0.2.1 ; python_version >= "3.8" and python_version < "3.9"
backports-zoneinfo[tzdata]==0.2.1 ; python_version >= "3.8" and python_version < "3.9"
billiard==4.2.0 ; python_version >= "3.8" and python_version < "3.13"
black==24.2.0 ; python_version >= "3.8" and python_version < "3.13"
build==1.0.3 ; python_version >= "3.8" and python_version < "3.13"
black==24.1.1 ; python_version >= "3.8" and python_version < "3.13"
build==1.1.1 ; python_version >= "3.8" and python_version < "3.13"
cachecontrol[filecache]==0.13.1 ; python_version >= "3.8" and python_version < "3.13"
celery==5.3.6 ; python_version >= "3.8" and python_version < "3.13"
certifi==2024.2.2 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -29,13 +29,13 @@ coverage[toml]==7.4.3 ; python_version >= "3.8" and python_version < "3.13"
cryptography==42.0.5 ; python_version >= "3.8" and python_version < "3.13"
cwltest==2.4.20240129145612 ; python_version >= "3.8" and python_version < "3.13"
cycler==0.12.1 ; python_version >= "3.8" and python_version < "3.13"
darker==1.7.2 ; python_version >= "3.8" and python_version < "3.13"
darker==1.7.3 ; python_version >= "3.8" and python_version < "3.13"
defusedxml==0.7.1 ; python_version >= "3.8" and python_version < "3.13"
deprecated==1.2.14 ; python_version >= "3.8" and python_version < "3.13"
docutils==0.18.1 ; python_version >= "3.8" and python_version < "3.13"
exceptiongroup==1.2.0 ; python_version >= "3.8" and python_version < "3.11"
filelock==3.13.1 ; python_version >= "3.8" and python_version < "3.13"
fluent-logger==0.10.0 ; python_version >= "3.8" and python_version < "3.13"
fluent-logger==0.11.0 ; python_version >= "3.8" and python_version < "3.13"
fonttools==4.49.0 ; python_version >= "3.8" and python_version < "3.13"
frozenlist==1.4.1 ; python_version >= "3.8" and python_version < "3.13"
galaxy-release-util==0.1.7 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -46,15 +46,15 @@ httpx==0.27.0 ; python_version >= "3.8" and python_version < "3.13"
idna==3.6 ; python_version >= "3.8" and python_version < "3.13"
imagesize==1.4.1 ; python_version >= "3.8" and python_version < "3.13"
importlib-metadata==7.0.1 ; python_version >= "3.8" and python_version < "3.13"
importlib-resources==6.1.1 ; python_version >= "3.8" and python_version < "3.10"
importlib-resources==6.1.2 ; python_version >= "3.8" and python_version < "3.10"
iniconfig==2.0.0 ; python_version >= "3.8" and python_version < "3.13"
isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.13"
isort==5.13.2 ; python_version >= "3.8" and python_version < "3.13"
jaraco-classes==3.3.1 ; python_version >= "3.8" and python_version < "3.13"
jeepney==0.8.0 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "linux"
jinja2==3.1.3 ; python_version >= "3.8" and python_version < "3.13"
junit-xml==1.9 ; python_version >= "3.8" and python_version < "3.13"
keyring==24.3.0 ; python_version >= "3.8" and python_version < "3.13"
keyring==24.3.1 ; python_version >= "3.8" and python_version < "3.13"
kiwisolver==1.4.5 ; python_version >= "3.8" and python_version < "3.13"
kombu==5.3.5 ; python_version >= "3.8" and python_version < "3.13"
lxml==4.9.4 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -68,7 +68,7 @@ mdurl==0.1.2 ; python_version >= "3.8" and python_version < "3.13"
mirakuru==2.5.2 ; python_version >= "3.8" and python_version < "3.13"
mistune==2.0.5 ; python_version >= "3.8" and python_version < "3.13"
more-itertools==10.2.0 ; python_version >= "3.8" and python_version < "3.13"
msgpack==1.0.7 ; python_version >= "3.8" and python_version < "3.13"
msgpack==1.0.8 ; python_version >= "3.8" and python_version < "3.13"
multidict==6.0.5 ; python_version >= "3.8" and python_version < "3.13"
mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13"
myst-parser==2.0.0 ; python_version >= "3.8" and python_version < "3.13"
Expand Down Expand Up @@ -110,20 +110,20 @@ pytest-mock==3.12.0 ; python_version >= "3.8" and python_version < "3.13"
pytest-playwright==0.4.4 ; python_version >= "3.8" and python_version < "3.13"
pytest-postgresql==5.1.0 ; python_version >= "3.8" and python_version < "3.13"
pytest-shard==0.1.2 ; python_version >= "3.8" and python_version < "3.13"
pytest==7.4.4 ; python_version >= "3.8" and python_version < "3.13"
python-dateutil==2.8.2 ; python_version >= "3.8" and python_version < "3.13"
pytest==8.0.2 ; python_version >= "3.8" and python_version < "3.13"
python-dateutil==2.9.0.post0 ; python_version >= "3.8" and python_version < "3.13"
python-irodsclient==2.0.0 ; python_version >= "3.8" and python_version < "3.13"
python-slugify==8.0.4 ; python_version >= "3.8" and python_version < "3.13"
pytz==2024.1 ; python_version >= "3.8" and python_version < "3.9"
pywin32-ctypes==0.2.2 ; python_version >= "3.8" and python_version < "3.13" and sys_platform == "win32"
pyyaml==6.0.1 ; python_version >= "3.8" and python_version < "3.13"
rdflib==6.3.2 ; python_version >= "3.8" and python_version < "3.13"
readme-renderer==42.0 ; python_version >= "3.8" and python_version < "3.13"
readme-renderer==43.0 ; python_version >= "3.8" and python_version < "3.13"
requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.13"
requests==2.31.0 ; python_version >= "3.8" and python_version < "3.13"
responses==0.25.0 ; python_version >= "3.8" and python_version < "3.13"
rfc3986==2.0.0 ; python_version >= "3.8" and python_version < "3.13"
rich==13.7.0 ; python_version >= "3.8" and python_version < "3.13"
rich==13.7.1 ; python_version >= "3.8" and python_version < "3.13"
ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_version < "3.13" and python_version >= "3.8"
ruamel-yaml==0.18.6 ; python_version >= "3.8" and python_version < "3.13"
schema-salad==8.5.20240102191335 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -134,7 +134,7 @@ selenium==4.18.1 ; python_version >= "3.8" and python_version < "3.13"
seletools==1.4.0 ; python_version >= "3.8" and python_version < "3.13"
setuptools==69.1.1 ; python_version >= "3.8" and python_version < "3.13"
six==1.16.0 ; python_version >= "3.8" and python_version < "3.13"
sniffio==1.3.0 ; python_version >= "3.8" and python_version < "3.13"
sniffio==1.3.1 ; python_version >= "3.8" and python_version < "3.13"
snowballstemmer==2.2.0 ; python_version >= "3.8" and python_version < "3.13"
sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "3.13"
sphinx-rtd-theme==1.3.0 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -147,7 +147,7 @@ sphinxcontrib-jsmath==1.0.1 ; python_version >= "3.8" and python_version < "3.13
sphinxcontrib-qthelp==1.0.3 ; python_version >= "3.8" and python_version < "3.13"
sphinxcontrib-serializinghtml==1.1.5 ; python_version >= "3.8" and python_version < "3.13"
statsd==4.0.1 ; python_version >= "3.8" and python_version < "3.13"
testfixtures==8.0.0 ; python_version >= "3.8" and python_version < "3.13"
testfixtures==8.1.0 ; python_version >= "3.8" and python_version < "3.13"
text-unidecode==1.3 ; python_version >= "3.8" and python_version < "3.13"
tinydb==4.8.0 ; python_version >= "3.8" and python_version < "3.13"
toml==0.10.2 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -157,7 +157,7 @@ trio==0.24.0 ; python_version >= "3.8" and python_version < "3.13"
tuspy==1.0.3 ; python_version >= "3.8" and python_version < "3.13"
twill==3.2.2 ; python_version >= "3.8" and python_version < "3.13"
twine==5.0.0 ; python_version >= "3.8" and python_version < "3.13"
typing-extensions==4.9.0 ; python_version >= "3.8" and python_version < "3.13"
typing-extensions==4.10.0 ; python_version >= "3.8" and python_version < "3.13"
tzdata==2024.1 ; python_version >= "3.8" and python_version < "3.13"
urllib3==1.26.18 ; python_version >= "3.8" and python_version < "3.13"
urllib3[socks]==1.26.18 ; python_version >= "3.8" and python_version < "3.13"
Expand Down
2 changes: 1 addition & 1 deletion lib/galaxy/dependencies/pinned-lint-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -4,4 +4,4 @@ flake8-bugbear==24.2.6
mccabe==0.7.0
pycodestyle==2.11.1
pyflakes==3.2.0
ruff==0.2.2
ruff==0.3.0
26 changes: 13 additions & 13 deletions lib/galaxy/dependencies/pinned-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

a2wsgi==1.10.2 ; python_version >= "3.8" and python_version < "3.13"
adal==1.2.7 ; python_version >= "3.8" and python_version < "3.13"
aiobotocore==2.11.2 ; python_version >= "3.8" and python_version < "3.13"
aiobotocore==2.12.0 ; python_version >= "3.8" and python_version < "3.13"
aiodataloader==0.4.0 ; python_version >= "3.8" and python_version < "3.13"
aiofiles==23.2.1 ; python_version >= "3.8" and python_version < "3.13"
aiohttp==3.9.3 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -13,7 +13,7 @@ amqp==5.2.0 ; python_version >= "3.8" and python_version < "3.13"
aniso8601==9.0.1 ; python_version >= "3.8" and python_version < "3.13"
annotated-types==0.6.0 ; python_version >= "3.8" and python_version < "3.13"
anyio==4.3.0 ; python_version >= "3.8" and python_version < "3.13"
apispec==6.4.0 ; python_version >= "3.8" and python_version < "3.13"
apispec==6.5.0 ; python_version >= "3.8" and python_version < "3.13"
appdirs==1.4.4 ; python_version >= "3.8" and python_version < "3.13"
arcp==0.2.1 ; python_version >= "3.8" and python_version < "3.13"
argcomplete==3.2.2 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -33,7 +33,7 @@ bioblend==1.2.0 ; python_version >= "3.8" and python_version < "3.13"
bleach==6.1.0 ; python_version >= "3.8" and python_version < "3.13"
boltons==23.1.1 ; python_version >= "3.8" and python_version < "3.13"
boto==2.49.0 ; python_version >= "3.8" and python_version < "3.13"
botocore==1.34.34 ; python_version >= "3.8" and python_version < "3.13"
botocore==1.34.51 ; python_version >= "3.8" and python_version < "3.13"
bx-python==0.11.0 ; python_version >= "3.8" and python_version < "3.13"
cachecontrol[filecache]==0.13.1 ; python_version >= "3.8" and python_version < "3.13"
celery==5.3.6 ; python_version >= "3.8" and python_version < "3.13"
Expand Down Expand Up @@ -65,7 +65,7 @@ docutils==0.18.1 ; python_version >= "3.8" and python_version < "3.13"
dparse==0.6.3 ; python_version >= "3.8" and python_version < "3.13"
ecdsa==0.18.0 ; python_version >= "3.8" and python_version < "3.13"
edam-ontology==1.25.2 ; python_version >= "3.8" and python_version < "3.13"
email-validator==2.1.0.post1 ; python_version >= "3.8" and python_version < "3.13"
email-validator==2.1.1 ; python_version >= "3.8" and python_version < "3.13"
exceptiongroup==1.2.0 ; python_version >= "3.8" and python_version < "3.11"
fastapi==0.110.0 ; python_version >= "3.8" and python_version < "3.13"
filelock==3.13.1 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -89,7 +89,7 @@ h5py==3.10.0 ; python_version >= "3.8" and python_version < "3.13"
humanfriendly==10.0 ; python_version >= "3.8" and python_version < "3.13"
idna==3.6 ; python_version >= "3.8" and python_version < "3.13"
importlib-metadata==7.0.1 ; python_version >= "3.8" and python_version < "3.13"
importlib-resources==6.1.1 ; python_version >= "3.8" and python_version < "3.9"
importlib-resources==6.1.2 ; python_version >= "3.8" and python_version < "3.9"
isa-rwval==0.10.10 ; python_version >= "3.8" and python_version < "3.13"
isal==1.6.0 ; python_version >= "3.8" and python_version < "3.13"
isodate==0.6.1 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -110,7 +110,7 @@ mercurial==6.6.3 ; python_version >= "3.8" and python_version < "3.13"
mistune==2.0.5 ; python_version >= "3.8" and python_version < "3.13"
mrcfile==1.5.0 ; python_version >= "3.8" and python_version < "3.13"
msal==1.27.0 ; python_version >= "3.8" and python_version < "3.13"
msgpack==1.0.7 ; python_version >= "3.8" and python_version < "3.13"
msgpack==1.0.8 ; python_version >= "3.8" and python_version < "3.13"
multidict==6.0.5 ; python_version >= "3.8" and python_version < "3.13"
mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13"
networkx==2.5 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -135,10 +135,10 @@ pulsar-galaxy-lib==0.15.6 ; python_version >= "3.8" and python_version < "3.13"
pyasn1==0.5.1 ; python_version >= "3.8" and python_version < "3.13"
pycparser==2.21 ; python_version >= "3.8" and python_version < "3.13"
pycryptodome==3.20.0 ; python_version >= "3.8" and python_version < "3.13"
pydantic-core==2.14.6 ; python_version >= "3.8" and python_version < "3.13"
pydantic-core==2.16.3 ; python_version >= "3.8" and python_version < "3.13"
pydantic-tes==0.1.5 ; python_version >= "3.8" and python_version < "3.13"
pydantic==2.5.3 ; python_version >= "3.8" and python_version < "3.13"
pydantic[email]==2.5.3 ; python_version >= "3.8" and python_version < "3.13"
pydantic==2.6.3 ; python_version >= "3.8" and python_version < "3.13"
pydantic[email]==2.6.3 ; python_version >= "3.8" and python_version < "3.13"
pydot==2.0.0 ; python_version >= "3.8" and python_version < "3.13"
pyeventsystem==0.1.0 ; python_version >= "3.8" and python_version < "3.13"
pyfaidx==0.8.1.1 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -151,7 +151,7 @@ pynacl==1.5.0 ; python_version >= "3.8" and python_version < "3.13"
pyparsing==3.1.1 ; python_version >= "3.8" and python_version < "3.13"
pyreadline3==3.4.1 ; sys_platform == "win32" and python_version >= "3.8" and python_version < "3.13"
pysam==0.22.0 ; python_version >= "3.8" and python_version < "3.13"
python-dateutil==2.8.2 ; python_version >= "3.8" and python_version < "3.13"
python-dateutil==2.9.0.post0 ; python_version >= "3.8" and python_version < "3.13"
python-jose==3.3.0 ; python_version >= "3.8" and python_version < "3.13"
python-magic==0.4.27 ; python_version >= "3.8" and python_version < "3.13"
python-multipart==0.0.9 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -168,7 +168,7 @@ requests-oauthlib==1.3.1 ; python_version >= "3.8" and python_version < "3.13"
requests-toolbelt==1.0.0 ; python_version >= "3.8" and python_version < "3.13"
requests-unixsocket==0.3.0 ; python_version >= "3.8" and python_version < "3.13"
requests==2.31.0 ; python_version >= "3.8" and python_version < "3.13"
rich==13.7.0 ; python_version >= "3.8" and python_version < "3.13"
rich==13.7.1 ; python_version >= "3.8" and python_version < "3.13"
rocrate==0.9.0 ; python_version >= "3.8" and python_version < "3.13"
routes==2.5.1 ; python_version >= "3.8" and python_version < "3.13"
rpds-py==0.18.0 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -181,7 +181,7 @@ setuptools-scm==5.0.2 ; python_version >= "3.8" and python_version < "3.13"
setuptools==69.1.1 ; python_version >= "3.8" and python_version < "3.13"
shellescape==3.8.1 ; python_version >= "3.8" and python_version < "3.13"
six==1.16.0 ; python_version >= "3.8" and python_version < "3.13"
sniffio==1.3.0 ; python_version >= "3.8" and python_version < "3.13"
sniffio==1.3.1 ; python_version >= "3.8" and python_version < "3.13"
social-auth-core[openidconnect]==4.0.3 ; python_version >= "3.8" and python_version < "3.13"
sortedcontainers==2.4.0 ; python_version >= "3.8" and python_version < "3.13"
spython==0.3.13 ; python_version >= "3.8" and python_version < "3.13"
Expand All @@ -201,7 +201,7 @@ tornado==6.4 ; python_version >= "3.8" and python_version < "3.13"
tqdm==4.66.2 ; python_version >= "3.8" and python_version < "3.13"
tuspy==1.0.3 ; python_version >= "3.8" and python_version < "3.13"
tuswsgi==0.5.5 ; python_version >= "3.8" and python_version < "3.13"
typing-extensions==4.9.0 ; python_version >= "3.8" and python_version < "3.13"
typing-extensions==4.10.0 ; python_version >= "3.8" and python_version < "3.13"
tzdata==2024.1 ; python_version >= "3.8" and python_version < "3.13"
tzlocal==5.2 ; python_version >= "3.8" and python_version < "3.13"
ubiquerg==0.7.0 ; python_version >= "3.8" and python_version < "3.13"
Expand Down
12 changes: 6 additions & 6 deletions lib/galaxy/dependencies/pinned-typecheck-requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -5,21 +5,21 @@ lxml-stubs==0.5.1 ; python_version >= "3.8" and python_version < "3.13"
mypy-extensions==1.0.0 ; python_version >= "3.8" and python_version < "3.13"
mypy==1.8.0 ; python_version >= "3.8" and python_version < "3.13"
pycparser==2.21 ; python_version >= "3.8" and python_version < "3.13" and platform_python_implementation != "PyPy"
pydantic-core==2.14.6 ; python_version >= "3.8" and python_version < "3.13"
pydantic==2.5.3 ; python_version >= "3.8" and python_version < "3.13"
pydantic-core==2.16.3 ; python_version >= "3.8" and python_version < "3.13"
pydantic==2.6.3 ; python_version >= "3.8" and python_version < "3.13"
tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11"
types-bleach==6.1.0.20240222 ; python_version >= "3.8" and python_version < "3.13"
types-boto==2.49.18.20240205 ; python_version >= "3.8" and python_version < "3.13"
types-contextvars==2.4.7.3 ; python_version >= "3.8" and python_version < "3.13"
types-dataclasses==0.6.6 ; python_version >= "3.8" and python_version < "3.13"
types-docutils==0.20.0.20240201 ; python_version >= "3.8" and python_version < "3.13"
types-html5lib==1.1.11.20240222 ; python_version >= "3.8" and python_version < "3.13"
types-docutils==0.20.0.20240302 ; python_version >= "3.8" and python_version < "3.13"
types-html5lib==1.1.11.20240228 ; python_version >= "3.8" and python_version < "3.13"
types-markdown==3.5.0.20240129 ; python_version >= "3.8" and python_version < "3.13"
types-paramiko==3.4.0.20240205 ; python_version >= "3.8" and python_version < "3.13"
types-pkg-resources==0.1.3 ; python_version >= "3.8" and python_version < "3.13"
types-python-dateutil==2.8.19.20240106 ; python_version >= "3.8" and python_version < "3.13"
types-pyyaml==6.0.12.12 ; python_version >= "3.8" and python_version < "3.13"
types-requests==2.31.0.6 ; python_version >= "3.8" and python_version < "3.13"
types-six==1.16.21.20240106 ; python_version >= "3.8" and python_version < "3.13"
types-six==1.16.21.20240301 ; python_version >= "3.8" and python_version < "3.13"
types-urllib3==1.26.25.14 ; python_version >= "3.8" and python_version < "3.13"
typing-extensions==4.9.0 ; python_version >= "3.8" and python_version < "3.13"
typing-extensions==4.10.0 ; python_version >= "3.8" and python_version < "3.13"

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