raise report level for some shed linting #1111
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I think these are all cases which lead to errors in deploying. fixes https://github.com/galaxyproject/tools-iuc/issues/3384
to make it pass shed_lint without --tool
bernt-matthias
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| lint_ctx.warn(msg) | ||
| lint_ctx.error(msg) | ||
| else: | ||
| lint_ctx.error("Repository does not define: %s" % key) |
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I think this is going against the original intent of the method _lint_if_present ? E.g. type is unrestricted by default, so probably no need to give an error if it's not present.
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Maybe we can rename the function? My aim it to error in cases where shed_lint
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OK. I see .. the type does not need to be defined in .shed.yml.
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Is this also the case for name, owner, and categories?
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name and owner can be specified on the command-line with e.g. shed_update. name defaults to the directory name if it's not specified in other ways. Categories I think are optional? I suppose these can all be warnings if not present.
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I think name and owner should also be in the realized repo if given on the command line:
planemo/planemo/shed/__init__.py
Line 1022 in 157cace
name ..)
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| @@ -290,14 +290,14 @@ def lint_repository_dependencies(realized_repository, lint_ctx): | |||
| def lint_shed_yaml(realized_repository, lint_ctx): | |||
| path = realized_repository.real_path | |||
| shed_yaml = os.path.join(path, ".shed.yml") | |||
| if not os.path.exists(shed_yaml): | |||
| lint_ctx.info("No .shed.yml file found, skipping.") | |||
| if not os.path.exists(shed_yaml) and realized_repository.repository_type != REPO_TYPE_UNRESTRICTED: | |||
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Not sure I understand this change?
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Was an attempt to fix the testing error for https://github.com/galaxyproject/planemo/tree/master/tests/data/repos/suite_1 which fails because there is no .shed.yml .. which is OK in this case .. or isn't it?
I think these are all cases which lead to errors in deploying.
fixes #1112