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| <tool id="poretools_events" name="Extract nanopore events" version="@[email protected]"> | ||
| <tool id="poretools_events" name="Extract nanopore events" version="@[email protected]" profile="@PROFILE@"> | ||
| <description>from a set of sequencing reads</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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| <tool id="poretools_extract" name="Extract reads" version="@[email protected]"> | ||
| <tool id="poretools_extract" name="Extract reads" version="@[email protected]" profile="@PROFILE@"> | ||
| <description>in FASTA or FASTQ format from nanopore files</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| <tool id="poretools_hist" name="Generate histogram" version="@[email protected]"> | ||
| <tool id="poretools_hist" name="Generate histogram" version="@[email protected]" profile="@PROFILE@"> | ||
| <description>of nanopore read lengths</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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| Original file line number | Diff line number | Diff line change |
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| @@ -1,4 +1,4 @@ | ||
| <tool id="poretools_nucdist" name="Show nucleotide" version="@[email protected]"> | ||
| <tool id="poretools_nucdist" name="Show nucleotide" version="@[email protected]" profile="@PROFILE@"> | ||
| <description>distribution in nanopore sequencing reads</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| <tool id="poretools_occupancy" name="Plot performance" version="@[email protected]"> | ||
| <tool id="poretools_occupancy" name="Plot performance" version="@[email protected]" profile="@PROFILE@"> | ||
| <description>per cell in nanopore reads</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| <tool id="poretools_qualdist" name="Show quality" version="@[email protected]"> | ||
| <tool id="poretools_qualdist" name="Show quality" version="@[email protected]" profile="@PROFILE@"> | ||
| <description>score distribution in nanopore sequencing reads</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| <tool id="poretools_qualpos" name="Generate box-whisker" version="@[email protected]"> | ||
| <tool id="poretools_qualpos" name="Generate box-whisker" version="@[email protected]" profile="@PROFILE@"> | ||
| <description>plot of quality score distribution over positions in nanopore reads</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| <tool id="poretools_squiggle" name="Plot signals" version="@[email protected]" profile="@profile@"> | ||
| <tool id="poretools_squiggle" name="Plot signals" version="@[email protected]" profile="@profile@" profile="@PROFILE@"> | ||
| <description>for nanopore reads</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| <tool id="poretools_stats" name="Read length statistics" version="@[email protected]"> | ||
| <tool id="poretools_stats" name="Read length statistics" version="@[email protected]" profile="@PROFILE@"> | ||
| <description>from a set of FAST5 files</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| <tool id="poretools_tabular" name="Extract FASTQ" version="@[email protected]"> | ||
| <tool id="poretools_tabular" name="Extract FASTQ" version="@[email protected]" profile="@PROFILE@"> | ||
| <description>in tabular format from a set of FAST5 files</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| <tool id="poretools_times" name="Extract time" version="@[email protected]"> | ||
| <tool id="poretools_times" name="Extract time" version="@[email protected]" profile="@PROFILE@"> | ||
| <description>and channel information from a set of FAST5 files</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| <tool id="poretools_winner" name="Get longest read" version="@[email protected]"> | ||
| <tool id="poretools_winner" name="Get longest read" version="@[email protected]" profile="@PROFILE@"> | ||
| <description>from a set of FAST5 files.</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,4 @@ | ||
| <tool id="poretools_yield_plot" name="Collector’s curve" version="@[email protected]"> | ||
| <tool id="poretools_yield_plot" name="Collector’s curve" version="@[email protected]" profile="@PROFILE@"> | ||
| <description>of sequencing yield over time</description> | ||
| <macros> | ||
| <import>macros.xml</import> | ||
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