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reformat and remove obsolete option
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bgruening committed May 18, 2024
1 parent b544367 commit cb4ba80
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2 changes: 0 additions & 2 deletions tools/seqkit/seqkit_locate.xml
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,6 @@ seqkit locate
--pattern-file '$conditional_pattern.pattern_file'
#end if
$output_mode
--validate-seq-length $advanced_options.validate_seq_length
$advanced_options.circular
$advanced_options.degenerate
$advanced_options.hide_matched
Expand Down Expand Up @@ -86,7 +85,6 @@ $advanced_options.id_ncbi
<option value="--bed">BED6</option>
</param>
<section name="advanced_options" title="Advanced options">
<param argument="--validate-seq-length" type="integer" min="0" value="10000" label="Lenth of the sequence to validate" help="Default: 10000" />
<param argument="--circular" type="boolean" truevalue="--circular" falsevalue="" checked="false" label="Circular genome"
help="When using flag --circular, end position of matched subsequence that crossing genome sequence end would be greater than sequence length" />
<param argument="--degenerate" type="boolean" truevalue="--degenerate" falsevalue="" checked="false" label="Pattern/motif contains degenerate bases"
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